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Dear MTAG-knowledged
I'm investigating the genetics behind 4 similar traits through 4 GWAS. The 4 traits are kind of the same, but are calculated with different mathematics. My hypothesis is that …
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From email chain with Rob:
```
Here’s a few stories based on [Treehouse’s](https://treehousegenomics.soe.ucsc.edu/) current Jupyter analysis [notebooks](https://github.com/UCSC-Treehouse/jupyterhub)…
kozbo updated
7 years ago
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Hello,
When I run 'make all' in the main directory, I don't think iAdmix builds correctly. The executable files are present in the main directory after running 'make all', but running yields an e…
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Dear,
TensorQTL in trans mode (tran-eQTL) displays the following error message at the Terminal window. It also shows the warning: " 'rfunc' cannot be imported. R and the 'rpy2' Python package are n…
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Dear,
TensorQTL in trans mode (tran-eQTL) displays the following error message at the Terminal window. It also shows the warning: " 'rfunc' cannot be imported. R and the 'rpy2' Python package are …
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Arachis/stenosperma/annotations/V10309.gnm1…
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VCF downloaded here http://www.completegenomics.com/public-data/69-Genomes/ causes a parse error when running vcf2wt.
The error can be isolated to a single line vcf as follows:
```
##fileformat=VCFv…
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We need to be able to capture structural variants like this:
```
"genomicInterpretations": [
{
"subjectOrBiosampleId": "Novara, 2017_P2",
"interpretationStatus…
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Hi dear Ensembl team,
I'm having some issues because I would like to annotate my genetic variants based on the canonical isoforms from UniProt, but I can't find a way to do it. Sometimes the MANE …
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I have single cell Hi-C samples with strong signal from structural variants that I wanted to mask, so I used Fast-Higashi instead of Higashi for them, removing regions with SVs. Can I still use scGHOS…