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## Sasha's Paper
- Does Sasha's paper filter SNPs initially through BSLMM?
- Why is it a different set of SNPs across cohorts (YFS, NTR are not overlapping)
- Why do some YFS folder not contain .map, …
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Hello,
Thank you for making this interesting piece of software I'm keen on using it on my own data sets. I've ran into a spot of bother using the munge_sumstats.py provided (downloaded on the 20/01/2…
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Hi
my h2 estimate is negative (shown below). I didn't have any issue during data munging. So I don't know what's wrong. BTW, my sample size is 300+, do you think is it too small for estimating heritab…
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Hello,
For a series of phenotypes I'm getting Ratio values of 17% and even 30%. The GWAS data is not genomic-controlled. However, when I tried a GC version of the same analyses, the results were not m…
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--h2-observed-to-liabiity FN
where FN is a text file. Input has any number of rows, each row has label (like mdd_old), h2_obs, K, Ncase, Ncontrol. Output repeats the input and adds h2_liab.
Others …
ghost updated
9 years ago
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Hello,
I'm analysing a quantitative trait (brain volume) in a population of unrelated subjects, controlled for population stratification, without genomic control. If I don't constraint the intercept, …
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I think listing the heritability in the phenotype table is confusing (as a row entry, not as a column entry). for example:
http://localhost:8080/gene/NCBIGene:55636
has two entries for "autosomal d…
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MKLau updated
10 years ago
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The name of the method is horrible, but it should be useful ... this follows this discussion
http://permalink.gmane.org/gmane.comp.lang.r.lme4.devel/10296
and a query from Kevin Wright.
The only co…
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As far as I know, you shouldn't put the editor of a journal article in the bibliography (it's definitely not mandatory and would confuse most readers. I don't have the style manual here though) and th…