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I would like to convert matrices in GInteractions format into h5 format.
I tried hicExport with an example file:
hicExport --inFile matrix.GInteractions.tsv --outFileName test.h5 --inputFormat G…
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I just follow the "Hi-C analysis of mouse ESCs using HiCExplorer" but when I try to use
I just get this.
so I delete the "type = lines", then try again, this time I got a pdf, but there is not…
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when I use a big sam/bam(20G~30G) file after bowtie2 or bwa , It seemed meet a mistake. The error information as follow !
The command I used ##：hicBuildMatrix --samFiles WHF4-1Hi-C_R1.sam WHF4-1Hi-C…
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I have no idea how to handle this kind of error. Could anyone help me, many thanks. Attached is my cfg file and err file.
[hicPlotTADs.err.txt](https://github.com/deeptools/HiCExplorer/files/256020…
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So if one installs HiCExplorer 2.1.4 first and then HiCMatrix, he will end up with HiCExplorer 2.1.1. I don't know if it is already known/wanted so I report it here.
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Hi,
I would like to export the matrix of zscore from findTADs to HiGlass. Have you ever tried to do that?
I managed to make a .cool from the h5 matrix but when i try to zoomify it I get the follo…
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Hi!, I'm trying to obtain the observed over expected matrix of all chromosomes stored in this cool file.
I get a strange error when I execute this command:
hicTransform --matrix jurkat_wild_type.c…
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when I run hicPlotTADs, I got this message, I don't know how to fix it
INFO:root:Generating grammar tables from /usr/lib/python2.7/lib2to3/Grammar.txt
INFO:root:Generating grammar tables from /us…
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Hi,
While running this command ` HiC dbg2olc40x -i /work/waterhouse_team/All_RawData/Benth/USA_ABombarely/Nbenthamiana_HiC/ -o /scratch/waterhouse_team/benth/dbg2olc-40x/snakepipes/snakePipes` I got:…
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Hi Fidel,
I updating the hicPlotTads Galaxy wrapper to be pyGenomeTracks wrapper and I have seen that since the last 2.0 release you added 50+ commits to master. I would like to include the latest …