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In the case of big files where the same molecules keep repeating multiple time. it is time-consuming to re-calculate the same features multiple time. is there any way to calculate the features and sav…
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Meeting note on Feb 26. 2021
1. DNA footprinting pipeline(shared by Shannon): http://www.regulatory-genomics.org/hint/introduction/
2. DNA footprinting paper (shared by Shannon): https://genomebiolo…
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ChemicalSubstance does not have any use cases defined.
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3/11/21 design meeting @arouinfar @kathy-phet @pixelzoom
We discussed adding a model-view transform that flips the y-axis, and then specifying the model in the typical "+y up, +angle counterclockw…
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## Description of bug / unexpected behavior
trying to set up logging in a config file fails
## Expected behavior
logs written to a file
## How to reproduce the issue
Code for reproduci…
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This is a follow-up to discussions we had on the 2020-11-30 ontology editors call.
Molecular functions can have different 'parts' or sub-functions, but it seems that sometimes these parts are is_a …
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Hey,
For isosurface representations, when I am changing the quality levels, I am not noticing much change in the actual representation. Between the `highest` and `lowest` quality, it seems that the…
iimry updated
3 years ago
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The fold_compound object is my preferred way of handling folding calculations in Python as I have better control over constraint adding, model parameters and the results are "complete" (RNA.duplex(seq…
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Hi
I would like to change the default color of one atom (element). I think there might be a kind of parameters of the view where this is defined but I do not found where.
I can add a sphere or s…