-
GanttStart: 2022-03-29
### Background
Transformed at high efficiency using Bloom lab's liquid recovery protocol: https://github.com/rasilab/rqc_aggregation_aging/issues/98
Library prepped: https://g…
-
Hi, I would like to consult a way to shorten assembly time when using additional plasmids reference. Thanks.
I noticed that when using additional references, such as plasmid, for assembly, the run…
-
The machine learning classifiers used for taxonomic assignment usually assume that all taxonomies are equally likely (eg. Wang, 2007). That assumption can be relaxed for `q2-feature-classifier`.
To…
-
Hi,
I am using the PolyA tail estimation in plasmids and I get shorter lengths than expected. I have a few questions about how to set up this feature.
The plasmid I sequenced has a very long poly…
-
ONT data does needs adapter chopping, quality filtering and length filtering. Adapter chopping for nanopore now references porechop, which is unmaintained as of 2018. Nanoflt is also recommended. I th…
-
@tnrich, I created this ticket to support its sister ticket in HDE: https://github.com/TeselaGen/hde/issues/954
----
**Visualizing functional vs. physical elements**
Functional elements (shown wi…
-
In ModelUsage.py you have the following comment.
> Basic Information
>
> Sequence length constraints
>
> The 3' model expects an input sequence which is 300bp long (stop codon + 297). It will h…
-
Will you do it too please?
-
I have paired end data out of illumina in fastq format
like file_R1.fastq and file_R2.fastq
Does LexicMap gives result with paried end fastq data and abundance score ?
I have indexed my re…
-
Hi there!!
I have been running pling last week without any problem (after a few simple formatting issues) with a collection of around 450 elements.
Now I changed to a bigger collection and it is cr…