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This issue relates to Indic scripts and others in which shaping involves a glyph reordering stage that is based on output of pre-reordering features, and in particular the reordering of reph and ikar …
tiroj updated
3 years ago
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Hi,
I build an assembly using long-reads and now I want to polish it using POLCA.
At first, I didn't specify the $PATH to bwa, but fixed it, then had a memory issue, and then it almost worked.
Th…
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Hi,
Thanks for this very useful package! I'm interesting in running the tool on some smart-seq2 datasets.
How should I set up the files so that I can keep using the same snakefile?
Thanks in ad…
jmfa updated
11 months ago
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Hi Alex, and thanks for building and maintaining the best RNA aligner around! :)
I have problems with overlapping paired end reads not being properly aligned across splice junctions, such as in thi…
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Hi
I have a question in regards to how VG handles repeat regions.
My genome is around 80% repeats, based on some papers I've read and my results with Repeat Masker.
I'm working with a 20 geno…
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(C# DirectML int4 phi 3 mini onnx) Using genai api.
Very specific certain prompts crash. Although I haven't yet found a pattern. It isn't to do with the length of the prompt either since certain sh…
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The VCF specifications express a number of (optional) variant parameters through use of the `INFO` field. This is e.g. necessary for the representation of any structural variant (`END`, `SVLEN`, `CIPO…
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Hi,
I am working on tetraploid potato and trying to run nPhase on my dataset, but as you mention yourself it is very time consuming and I had to terminate the process after running it for 8 days. I w…
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Gather observations from literature on how strains and antigen types within strains compete and are affected by immunity.
Should be some overlap with Philip's initial 1.0 mechanism for search in var…
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Dear,
I try to ran bayestyper. First of all I ran KMC and bayestypertools without any problem, but when I want to run bayestyper cluster appear the following error:
bayesTyper: /isdata/kroghgrp/…