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The expected staging files format has changed a bit in #798 , so we need the new export of TCGA staging files to comply to that.
Logging this issue to keep track of the last issues to resolve.
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@matsen and I have been talking through an idea about how we might organize data around cft and cftweb (and perhaps other projects) to facilitate interoperability.
## Problem statement
Take a cs…
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Hi again,
i have progressed so far with the installation but run aground while trying to run this command:
ls *.bed | ../gargs -p 30 "bgzip {}"
i've googled it and found a command xargs and s…
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@MDiMeo @catlu
Known issue: This may do very weird things to non-English test, these stemming algorithms are always language-specific, and the more aggressive "porter" stemmer will be even weirder…
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Hi,
I have used ALLMAPS many times, but this is the first time I use 11 genetic maps.
The commands `python -m jcvi.assembly.allmaps merge ...` and `python -m jcvi.assembly.allmaps path ...` conclude…
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Hi,
I was wondering when concatenating scaffolds reported in the file (file.lifted.bed), what is the gap
length inserted between the two scaffolds?
In some cases in other genomes, for example t…
Homap updated
7 years ago
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I find some of these dubious (marked `???`). I am fairly sure the ones marked `***` are wrong.
```
[Term]
id: DOID:0050541
name: Charcot-Marie-Tooth disease type 4
namespace: disease_ontology
alt_id:…
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This issue is to get feedback on how to implement geodata support in the GA4GH schema. Principle options would be:
* adoption of the [RFC 7946](https://tools.ietf.org/html/rfc7946) "GeoJSON" specif…
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So if you get cloned and no one is around, you can't yell like a madman
Zth-- updated
7 years ago
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I have a plan to significantly improve AI. About 20% or planned changes are made, and progress will depend heavily of my load at work, but current changes are already worth to see. My code is in very …