-
Hello, I see at least two people encountering the same issue , which seems to be a problem with the median function defined in the mtVariantCaller.py script. Can any one help? Thanks
##### ASSEMBLI…
-
Hi, I am trying to use strelka-post-process in my pipeline. But I find the two classes imported in StrelkaPostProcessApplication.java,
com.hartwig.hmftools.strelka.mnv.ImmutableMNVMerger;
com.hartw…
-
Hello,
In the guide there is an example for running WGS samples from BAM , but for exome it shows example with Fastq files only. The same is true pipelines available after installation.
Would …
-
I have successfully annotated my vcf file using a local installation of variant effect predictor (VEP). However, the filtering doesn't work. E.g. the command
`filter_vep -i vep.test.vcf.gz -filter …
matmu updated
5 years ago
-
Hello Offical:
Is there a plugin or parameter that can print out diseases caused by genes?
-
Hi,
I downloaded dbNSFPv3.5a and processed it as mentioned in "https://github.com/Ensembl/VEP_plugins/blob/release/93/dbNSFP.pm".
However I am getting following error, please help me to solve it
…
-
Please can a list be generated from Moka of all the WES cases
Many thanks
-
Hi,
I am interested to find out if it is possible to load a track as a JSON object rather than a link to a file. In particular I would like to build a backend API to generate the necessary data to l…
-
Current behaviour is to give LOF variants such as stop gain a default score of 0.95. I remember when the original Exomiser (mouse-only) paper was reviewed the reviewers found it crazy we were not scor…
-
This is somewhat similar to previous issues so I hope it's a quick fix.
It's the pipeline update time of year, and I think this issue is being caused by SpliceAI. Essentially, SpliceAI is adding mu…