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when I see the bam in IGV, I found that too many too sharp peaks, and they are such as ' cigar=20S13M117S',
What can I do to filter these peaks? Is outFilterMatchNmin or seedSearchStartLmax?
Sincer…
lxy04 updated
11 months ago
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Hi folks,
We had trouble processing some data with 2.1.1.20160309 so we ran instead with 2.1.2.1. In another test we are seeing what look like significant differences in results between versions …
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I am running fooyin 0.8.1 installed through flatpak on Ubuntu 24.04.
My ReplayGain settings are:
Mode: Apply gain and prevent clipping according to peak
Type: Use album-based gain
Pr…
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CuPy's main branch now has a KDTree implementation (`cupyx.scipy.spatial.KDTree`). It is not released for CuPy 13.x, but we should investigate whether it provides benefit over falling back to the host…
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```
tiledlayout(2,1)
% Top plot
nexttile
surf(peaks)
colorbar
% Bottom plot
nexttile
mesh(peaks)
colorbar
fig2plotly(gcf);
```
bottom subplot is not created
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I have a weird problem. As soon as I move my Hands in games or crouch with my Quest 3 it is lagging/stuttering. It is not that strong, but it is noticeable. I tested many settings and nothing changed.…
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Like the opening peaks, the closing peak can be imprecise and there are various different types which shouldn't be treated by the same method. Therefore, in the part that peakdet asks for user's veri…
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Hi, I really appreciate your efforts making these tools.
I'm a quite new to this area and have a question rather than an issue.
I successfully completed jobs with epic and generated lists of peaks…
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Hi all,
I'm running into a odd issue where sporadically some of the /chunkedCountTensor/chunks_*.rds will be empty. This happens at random numbers (so not sequential) and the rest of the files loo…
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- Fragsize plots inside/outside peaks
- Pearson correlations between replicates along sliding window & within peaks
- Rmd report summarizing outputs