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Any reordering or hide/view would need to send out notification to listeners that need to be kept in sync. In particular the tree viewer.
The MSA viewer should listen for selection events from other …
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Add gene family consensus sequences as (peptide) blast targets at PeanutBase and LegumeInfo. Hits ought to link to the corresponding families, e.g. http://legumeinfo.org/chado_phylotree/phytozome_10.5…
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render view - error; phylotree not displayed -> try form tag with session keys
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when a mouseover on a track is performed (or a mouseover of an individual gene in a context track), most browsers will display labels for the genes and
intergenic distances, rotated 45 degrees clockwi…
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we'll need:
python (2.7.5)
with packages
Django (1.5.3)
psycopg2 (2.5.1)
mod_wsgi (4.4.6) for apache
and then something along the lines of this in the apache conf (with the appropriate modifications…
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An additional nice-to-have feature (maybe for a future development step ) would be a third field in the tree listing that gives the species counts. It could be like this:
Species counts*
40,23,3,4,3,…
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decide which links to include/exclude from the popup menu on the phylotree
[LEGUME-179] created by adf_ncgr
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this probably reflects my ignorance of tripal more than anything else, but putting it as an issue so as not to forget. In lis-adf (my sandbox dev) I added an analysis row for the phytozome-derived gen…
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this is actually well underway. we now have some examples of what the tree viewer will do with trees of < 4 nodes. See for examples,
3 nodes at http://lis-adf/node/227614
2 nodes at http://lis-adf/no…