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Hey all,
I'm having a consistent error with the installation of LFQ bench (see below). I think this possibly has to do with incorrect quoting? I am using the latest 4.02 version of R.
Thanks in …
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Hi Vadim,
I tried to compile DiaNN 1.7.12 on Linux Manjaro (up to date) without success. I don't know all the dependencies of the software, so here are my versions of glibc and gcc :
glibc 2.32-5…
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***question/request**
Is there currently a way to get separate precursor LFQ values for each of the modified peptide forms detected in open search? I am able to get the combined_peptides.tsv with int…
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Hello Alexey and Contributors,
I would like to process this huge gut-microbiomeDB (closed search, no fancy VarMod parameters) with FragPipe (incl. LFQ-MBR).
Do you think this is realistic on a s…
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**Describe the bug**
I wanted to use FragePipe and MSFragger to perform protein LFQ for Bruker TIMS TOF PASEF DDA data. When I start the pipeline with LFQ Match between runs and MaxLFQ, I get protein…
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Hello,
Thank you so much for all of your previous assistance, I have made some good progress with the software and look forward to investigating it further going forward.
I have many peptides id…
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* Ob die Condition/das Grouping im Namen vorkommt oder nicht sollte waehlbar sein…. – es macht keinen Sinn wenn da keine Conditions sind bzw NA im Feld steht, weils kein LFQ sondern ein reines Protein…
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I'm trying to run a PaRSEC benchmark (`testing_dgeqrf`) on a Cray XC40 with the latest v4.0.x compiled with the Intel compiler. For larger problem sizes (16 nodes, 24 threads per node, 20k^2 elements …
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Hi,
I am trying to design my own template to export ID features and one of the parameters I am particularly interested in is INtensity of the Precursor Ion. I can see that this value is present in th…
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Hi @anupshah14!
We just stumbled across your fork of the pipeline at https://github.com/nf-core/LFQ-Analyst/
It was a bit of a surprise, as none of us at @nf-core had heard of the pipeline befor…
ewels updated
4 years ago