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Thanks for sharing this dataset. I would like to ask for the data from cellxgene, is the batch correction applied for both the **low-dimensional reduction embedding** (e.g. UMAP) and the **expression …
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I have a 110 layer resnet trained and validated with 4 classes to classify. Training examples are in decent proportion (30%,20%,25%,25%). It has validation accuracy of around 90%. When testing it for …
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Hello,
I would like to do metaplots based on only one BAM file and several sets of regions. However, for each set region, I want to normalize each bin by the total coverage across all bins in that …
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I have many 0 data in my train data, the function normalise_windows will have the issues: float division by zero. The issue happened at : 'normalised_col = [((float(p) / float(window[0, col_i])) - 1…
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I have two data sets of single-cell transcriptomes: snrna and sprna, where snrna was obtained under Seurat v4.3 and sprna was obtained under Seurat v5. I use the same code, as shown below.
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W3.2…
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Following the normalization procedure described in [Specht et al. 2019](https://www.biorxiv.org/content/10.1101/665307v3) for normalizing single-cell proteomics data, I need to normalize the rows of a…
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Following youtube toturial, I firstly created an new project and moved my "report.tsv" file in it. Running DIAgui, shiny tool appeared. clicking "Select your report file", there is no any file in sele…
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Hello! I would like to know if the adata.X matrix should be normalized or left raw. In the tutorial, for example, for Stereo-seq, the matrix is already normalized, but for others, it is used raw. In m…
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i am working on TCGA database and want to prepare clinical data for analysis and normalization.i have data in csv format ,for TCGA biolinks preparation file can be in CEL format. so how can i prepare…
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Hi,
Thank you for this excellent work on normalization/entity linking.
As you say in your readme, it is not easy to collect the data.
In particular, it seems that the test set for TAC 2017 ADR is …