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Hello, I see at least two people encountering the same issue , which seems to be a problem with the median function defined in the mtVariantCaller.py script. Can any one help? Thanks
##### ASSEMBLI…
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Hi I was trying to upload a vcf file to gemini db using below command. and I am getting below error.
What could be the reason for this error ? I am also attaching a VCF file as well. When I am tryi…
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Hello,
In the guide there is an example for running WGS samples from BAM , but for exome it shows example with Fastq files only. The same is true pipelines available after installation.
Would …
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Hi, I am trying to use strelka-post-process in my pipeline. But I find the two classes imported in StrelkaPostProcessApplication.java,
com.hartwig.hmftools.strelka.mnv.ImmutableMNVMerger;
com.hartw…
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I have successfully annotated my vcf file using a local installation of variant effect predictor (VEP). However, the filtering doesn't work. E.g. the command
`filter_vep -i vep.test.vcf.gz -filter …
matmu updated
5 years ago
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Hello Offical:
Is there a plugin or parameter that can print out diseases caused by genes?
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Hi,
I downloaded dbNSFPv3.5a and processed it as mentioned in "https://github.com/Ensembl/VEP_plugins/blob/release/93/dbNSFP.pm".
However I am getting following error, please help me to solve it
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For new term requests, please provide the following information:
This request is on behalf of the ClinGen Rett/Angelman-like Variant Curation Expert Panel. Following precuration of this gene we fin…
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Current behaviour is to give LOF variants such as stop gain a default score of 0.95. I remember when the original Exomiser (mouse-only) paper was reviewed the reviewers found it crazy we were not scor…
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Hi,
I am interested to find out if it is possible to load a track as a JSON object rather than a link to a file. In particular I would like to build a backend API to generate the necessary data to l…