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Hi Brian,
I am integrating BLAST and Pfam hits to selection coding transcripts. I give following command and working in Transdecoder_trinity directory and already run Longest.Orf. But it give me fo…
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When a coding transcript with a truncated ORF at the 3', ie with a non-0 starting phase, passes through Mikado prepare, the program sets that phase to 0 arbitrarily. This should be repaired before the…
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Previously I was using the following pipeline for analysis:
Trimmomatic -> STAR -> Trinity (guide) -> TransDecoder.LongOrfs -> Blastp (uniprot_sprot) -> TransDecoder.Predict -> CD-HIT
I would li…
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gcc -Wall -I/public1/home/zhangxt/include -I. -Ihtslib-1.9 -c -o main.o main.c
In file included from main.c:33:
bcftools.h:42:50: error: expected ‘,’ or ‘;’ before ‘HTS_FORMAT’
void error(const …
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Dear Luigi,
I pulled the latest docker image iprscan_rpMask and met an error with parameter `-sp aspergillus_nidulans`
**After** `### GMAP IS CORRECTLY BUILD ###`
``` bash
Traceback (most recent c…
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Here's a link to the oyster proteome file I used for the DNR paper: http://owl.fish.washington.edu/halfshell/bu-git-repos/nb-2017/C_gigas/data/Cg_Gigaton_proteins.fa
Where did it come from? I deter…
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This is a busco problem related to augustus, [seen it before](https://gitlab.com/ezlab/busco/issues/27) but not sure how to fix here. Augustus is there, and so is the pipebricks module:
```
/home/lj…
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Hi,
I did following command but it give me follow error. Please let me know how to fix it
export PATH=/usr/local/bin/hmmscan:$PATH
-bash-4.2$ /usr/local/bin/hmmscan --cpu 8 --domtblout pfam.do…
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Please add any tools that you're adding to conda below. Feel free to modify this comment to add things.
- [x] hmmer3 galaxyproject/tools-iuc/pull/841
- [x] deseq2 galaxyproject/tools-iuc/pull/842
- [x…