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Suggestions from @Antonialock
Some of these classes are not used often, but only show the classes that are present anyway
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Hello, I've been running stitch a bunch and this is the first time I'm seeing this particular error:
```
...
[2024-06-25 09:56:53] Done generating inputs
[2024-06-25 09:56:53] Copying files onto t…
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Hi,
may i inquire how to do allele specific/happlotype resolved methylation calling and analysis? a look in the literature requires phasing tools like whatsapp etc...
i already did base calling 5mc_…
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{manipulateWidget} is not working for [RStudio's {gt} package](https://gt.rstudio.com/):
Given the following two files as input for {gt} and {DiagrammeR} we will try and use the package to display …
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Hi ANGSD Team,
I am trying to use angsd to call SNP likelihoods for my samples for each chromosome in parallel to speed things up. However, the output files (e.g., snaps.beagle.gz, etc. ) are empt…
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Hello everyone, especially hg38 reference genome users!
Now bcbio has hg38 support for almost 5 years!
http://bcb.io/2015/09/17/hg38-validation/
However, many user were still on GRCh37/hg19, be…
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Hi,
I'm currently running SMC++ on data from four populations (each run independently) as well as bootstrap replicates for each population. This tool is working very well (thank you), but one odd t…
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Hi @eblerjana,
I've been working with `PanGenie` more often since my last issue. I was keen on assessing the performance for the genome inference of HG002, so I benchmarked my `PnaGenie` outputs fo…
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**Overall question**
Which software would you advise to perform differential expression analysis on the ReadCount produced by rpvg ?
**Context**
I've used the `mpmap-rpvg` pipeline to 1) map …
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Hi,
I used the following command:
` mentalist download_cgmlst -o lm_cgmlst_fasta -s 690488 -k 31 --db lm_cgmlst.db
`
to try and download the L. mono cgmlst and but got (in addition to a load of w…
ELPhD updated
5 years ago