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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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Then function [make_df] (https://github.com/hakyimlab/psychencode/blob/55ed82872238c7cad246fe3a61b8354cb45eb63e/analysis/generate_weights.Rmd#L72) incorrectly labels alleles from V5 and V6 as refere…
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**Improving multi-locus sequence typing software**
The study of the genomes of Borrelia burgdorferi, the organism that causes Lyme disease and is spread to animal hosts by ticks such as Ixodes scap…
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Hi,
I am currently evaluating Spectre for CNV calling on some GIAB HG002 ONT data and I encountered a few issues which I wasn't able to resolve myself.
Using mosdepth I tried to create required…
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Thank you for your reply before.
Now I can successfully use snakemake, and I have prepared all input files and softwares required for snakemake. I have made the config.yaml and put it in the folder "…
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Hi! Sabrina
I ran into this problem when running this:
```
genome=/home/hsher/genome_fa/GRCh38.p13.genome.fa
motifxml=/home/hsher/pureclip_motifs/motifs.xml
motiftxt=/home/hsher/pureclip_motifs/m…
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Hi,In the reported paper "Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model", ``r_1912`` is the biomass production reaction in which the protein coefficient is the …
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Hi Torsten,
Lots of bacterial genomes are lacking SRA data, preventing us from performing several reads-based analysis. I think you mentioned somewhere that "best reads are contigs", and do you rec…
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| Name | Department/Program | Experties/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Annie Cavalla | Bioinformatics | Cancer genomics, single cell tra…
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Hi,
I have run progressiveCactus on nine plant genomes. I have a large HAL file but I am not sure how to visualise it.
Can someone, in a nutshell, also explain to me what kind of analysis that can d…