glennhickey progressiveCactus issues

glennhickey / progressiveCactus

Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules

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Cannot install over git

#137 IOB-Muenster opened 6 months ago
0
cactus-hal2maf: command not found

#136 hopehealey opened 7 months ago
0
Support question: End-to-end chromosome alignments with progressive cactus

#135 JohnLloyd-Bayer opened 1 year ago
0
Detecting synteny blocks among multiple genomes?

#134 aminakur opened 1 year ago
0
cat: write error: No space left on device

#133 Andrinajoro opened 1 year ago
0
progressive_schedule fails

#132 vpymerel opened 2 years ago
2
Recomend ways to filter cactus result

#131 zhangzhiyangcs opened 2 years ago
0
The unauthenticated git protocol on port 9418 is no longer supported.

#130 ghost opened 2 years ago
0
cactus_consolidated error

#129 lpescitelli opened 2 years ago
2
New Version on Cactus "RunCactusPreprocessorThenProgressiveDown' i/O/jobsxUaNh with ID i/O/jobsxUaNh is completely failed"

#128 drabe004 opened 3 years ago
0
how many CPU hours it cost for 100 genomes

#127 yywyaoyaowu opened 3 years ago
0
trouble about make

#126 CaoShuoa opened 3 years ago
1
AssertionError: assert len(genomeNodes) == 1

#125 Jome0169 opened 3 years ago
0
Fatal Python error: initfsencoding: Unable to get the locale encoding

#124 DieTANG opened 3 years ago
0
RuntimeError: Command ['cactus_bar', '--logLevel', 'INFO', '--cactusDisk

#123 xianwenmeng closed 3 years ago
1
Assertion error during experimentWrapper.py

#122 stlomo opened 3 years ago
1
error: cannot convert ‘bool’ to ‘char*’ in return

#121 annabananakobana opened 5 years ago
1
RuntimeError: Failed to parse newick tree

#120 nt365 opened 5 years ago
5
Installation problem

#119 francicco opened 5 years ago
1
Unable to make. Fails with "Symbol not found: __PyCodecInfo_GetIncrementalDecoder"

#118 iljungr opened 5 years ago
0
job is completely failed

#117 amizeranschi opened 5 years ago
0
[../lib//halLib.a] Error

#116 francicco opened 6 years ago
0
installation error

#115 francicco closed 6 years ago
2
Unable to checkout in submodule path 'submodules/cactus'

#114 lurebgi closed 6 years ago
1
Setting the maxThreads param

#113 iminkin closed 6 years ago
2
Error with Kyoto Cabinet version 1.2.76 configuration

#112 Morteza-M-Saber closed 6 years ago
5
Trying to align 4 mice genomes, Cactus crashes

#111 iminkin closed 6 years ago
2
Handling masked characters

#110 iminkin closed 6 years ago
1
Sensitivity to tree topology and branch lengths?

#109 jasonsydes closed 5 years ago
6
Problem with tycoon database??

#108 tdlong opened 6 years ago
12
problems encountered when running examples provided

#107 ErinZhang1998 opened 6 years ago
0
Monitor progressiveCactus progress

#106 VidJa opened 6 years ago
0
Fix for #104, resubmitting a job when using relative dirs.

#105 jasonsydes closed 6 years ago
2
Resuming a job appears to be broken - I am providing debug output.

#104 jasonsydes opened 6 years ago
1
running via LSF

#103 chriswagmarder opened 6 years ago
0
Add ping to software dependencies

#102 robsyme closed 6 years ago
0
Unable to run example with minimal install

#101 robsyme closed 6 years ago
6
ambiguous=IUPAC, no IUPAC in alignment

#100 stsmall closed 6 years ago
2
explicitly run with python2.7

#99 diekhans opened 6 years ago
2
after changing python to python2 in runProgressiveCactus.sh, still print error

#98 cistarsa closed 6 years ago
6
print error after build

#97 cistarsa closed 6 years ago
2
tuning config with blastParametersScript

#96 stsmall opened 6 years ago
0
compile error fresh install kyotocabinet

#95 FantasticMrFux opened 6 years ago
7
Modify Cactus to use an aligner different from LASTZ

#94 lucventurini opened 7 years ago
3
OpenSSL: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version

#93 abmudd opened 7 years ago
19
runProgressiveCactus.sh never returns when run with thread/cpu options

#92 malcook opened 7 years ago
1
"Comparative Assembly Hub Pipeline" scaled down example sought

#91 malcook opened 7 years ago
0
hal2assemblyHub.py creates empty directory lacking hub contents

#90 malcook opened 7 years ago
2
HowTo evaluate progressiveCactus' use of available computational resources?

#89 malcook closed 7 years ago
1
HAL Export error. converter does not support adding more than one non-leaf:Anc1

#88 malcook closed 7 years ago
2