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glennhickey
/
progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
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NameError: global name 'refFileName' is not defined
#87
dbrowneup
opened
6 years ago
4
halSnps Error: Segmentation fault
#86
vsundaram
opened
6 years ago
3
job hanging
#85
aihardin
closed
6 years ago
3
Update hdf5
#84
glennhickey
closed
6 years ago
1
environment must add biopython to PYTHONPATH but does not
#83
malcook
closed
6 years ago
1
Allow progressive cactus to use UGE
#82
ndukler
closed
6 years ago
3
Name or service not known
#81
niehu2018
closed
6 years ago
0
can't zoom in on alignments in browser
#80
tdlong
opened
7 years ago
0
Alignment scores
#79
lydiasteiner
closed
7 years ago
2
Slurm Batch System
#78
rlim19
opened
7 years ago
2
Add genome to alignment
#77
juansearch
opened
7 years ago
11
Error with kyotocabinet member function.
#76
yifangt
opened
7 years ago
1
TypeError raised in exception report
#75
rsharris
opened
7 years ago
0
Makefile:19: recipe for target 'virtPyRule' failed
#74
cistarsa
closed
7 years ago
2
Several months for alignment
#73
juansearch
opened
7 years ago
4
Visualization with UCSC Genome Browser
#72
ammeyer
opened
7 years ago
2
PBS/Torque support
#71
xingwu2
opened
7 years ago
5
invalid syntax
#70
anubhabkhan
opened
7 years ago
4
How to increase alignment sensitivity?
#69
ChriKub
opened
7 years ago
0
Kyoto cabinet fails to compile with GCC 6
#68
fourpartswater
opened
7 years ago
0
invalid idx_offset with phastCons on alignment generated by progressiveCactus
#67
deepakunni3
opened
7 years ago
13
Block gapped multi chromosome alignments and single character alignments
#66
ChriKub
opened
7 years ago
1
halSnp Error
#65
mjfi2sb3
opened
7 years ago
0
how to visualise the results
#64
mjfi2sb3
opened
7 years ago
1
question about outgroups
#63
cooketho
opened
7 years ago
2
virtualenv problem
#62
Imoteph
opened
8 years ago
2
Running times
#61
iminkin
opened
8 years ago
0
Cannot build with non-system Python
#60
cganote
opened
8 years ago
0
Please use increasing version numbers for your release tags
#59
tillea
opened
8 years ago
1
make[3]: *** [th5s.o] Error 1
#58
sklages
closed
8 years ago
2
Missing check in fix_lib64 (virtualenv)
#57
marchoeppner
opened
8 years ago
0
ImportError: No module named importlib
#56
mjsull
opened
8 years ago
0
Liftover and ancestral
#55
juansearch
opened
8 years ago
1
No module named argparse
#54
martinjvickers
opened
8 years ago
0
Fail when specifying root
#53
juansearch
opened
8 years ago
0
hal2assemblyHub.py error
#52
tallnuttcsiro
opened
8 years ago
0
Error in resuming existing job
#51
marta-fb
opened
8 years ago
0
Bad fasta character
#50
Tetrajf
opened
8 years ago
5
Broken python environment
#49
cyrilcros
closed
4 years ago
4
using --root on two samples
#48
mahulchak
opened
8 years ago
1
Running realignment error
#47
ramoserica
opened
8 years ago
0
Still unable to install cactus
#46
rsharris
opened
8 years ago
10
kyoto tycoon network error
#45
cooketho
opened
8 years ago
7
Make error
#44
ramoserica
opened
8 years ago
0
git submodule update --init
#43
rlbc
opened
8 years ago
9
compile errors due to missing parameter in hal/chain/test/blockVizTest.c
#42
diekhans
closed
8 years ago
2
installation appears to require python executable be in /usr/local
#41
rsharris
closed
8 years ago
6
Compile error in hal2cactus
#40
mikolmogorov
closed
8 years ago
1
Example goes idle and does not progress
#39
l-schrader
opened
8 years ago
4
cactus_coverage takes a lot of memory
#38
tsackton
opened
9 years ago
2
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