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Hi, I am trying out kat, but I do not get a genome estimation result:
I am running: `kat hist -m 21 -h 200 -t 38 -v -p png -o wGorVio_kat wGorVio_reads.jf`
Here is the log file output:
```
…
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```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
-
```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
-
```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
-
```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
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I got many gcsa files. Each of them is to one specific chromosome. How do I do to combine many gcsa files into one file?
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The following command returns and error:
```
sourmash scripts randsampling -k 21 --sig ERR11520689.k21.sig.zip --max-kmers 1000 --plot -o sub/test.subsample.sig.zip
```
The error:
```
== This …
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If a significant change in methylation is detected, at which base pair is this change? Is it the position indicated by the pos column or perhaps the middle of the 5-bp kmer?
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Hi John
I'm trying to filter out unitigs associated with antibiotic resistance. I used unitig-counter but I am not sure what output file I should use to use pyseer later. Could you specify the use …
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I want to convert fasta file to NSV for k-mers frequency count. What code need to written in python and how to load file? Thank you!