TGAC KAT issues - Githubissues

TGAC / KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

http://www.earlham.ac.uk/kat-tools

GNU General Public License v3.0

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issues

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Kat comp finds specific kmers between 2 fastq files with the same reads not given in the same order (with a reproducible example)

#188 jfouret opened 3 months ago
0
KAT won't plot the hist spectra

#187 criveralopez opened 5 months ago
0
kat comp core dumped "corrupted double-linked list"

#186 alxsimon opened 5 months ago
0
no genome size estimation result

#185 AlcaArctica opened 7 months ago
1
NeedHelpIntepretingResults

#184 jiangqiuqiuu opened 8 months ago
0
kmer analysis with more than 6 x ploidy level of the genome

#183 rahulrca opened 8 months ago
0
limit X-axis of kat hist plot

#182 AlcaArctica opened 9 months ago
1
can't install with brew

#181 rmormando opened 10 months ago
0
Plotting issue using kat plot spectra-hist function

#180 criveralopez opened 11 months ago
0
y axis of gcp and 'plot density' always >= 25

#179 xiekunwhy opened 1 year ago
1
TypeError: object of type 'NoneType' has no len()

#178 xiekunwhy opened 1 year ago
1
Help with interpreting spectra-cn

#177 Paul-Donat closed 1 year ago
0
install LAT error

#176 biology-han opened 1 year ago
1
numpy issue when make install

#175 rmormando closed 1 year ago
0
Unable to install in Ubuntu 22.04 with python 3.10

#174 IgnasiLucas opened 1 year ago
2
../lib/include/kat/pyhelper.hpp([kat::KatPythonError*] = Unexpected python error

#173 kanishka12191 opened 1 year ago
0
Adjusting X-axis in kat comp

#172 Jokendo-collab opened 1 year ago
1
2.4.2 was tagged but not released

#171 zougloub opened 1 year ago
0
No module named 'PIL'

#170 theo-allnutt-bioinformatics opened 1 year ago
0
KAT comp for PacBio read and assembly

#169 herlianal12 opened 1 year ago
1
Can't compile

#168 theo-allnutt-bioinformatics opened 1 year ago
1
malloc_consolidate(): unaligned fastbin chunk detected

#167 nityendra21 opened 2 years ago
2
Unable to interprets results

#166 naahraissa88 opened 2 years ago
0
KAT comp - issue with big genome

#165 matryoskina opened 2 years ago
7
KAT comp stalling when making plots

#164 aaronphillips7493 opened 2 years ago
2
Can I make "kat hist" read from standard input?

#163 IgnasiLucas opened 2 years ago
0
kat filter error

#162 huilin-al opened 2 years ago
0
Issue with compiling KAT from the source on HPC

#161 AndriiTarieiev opened 2 years ago
0
Issue with KAT conda package

#160 AndriiTarieiev opened 2 years ago
1
KAT GCP plots are half white

#159 IoanaBrannstrom opened 2 years ago
2
Update doc with exceptions to gzip input

#158 kbseah closed 1 year ago
0
How to get two clear peaks? Heterozygous and Homozygous peaks

#157 hrpelg opened 3 years ago
1
KAT and long reads

#156 diriano closed 2 years ago
1
Color scale with low values

#155 Nina-pinheiro opened 3 years ago
0
Time

#154 Brett37490 closed 3 years ago
0
Using KAT to generate the k-mer spectrum

#153 Otis-chan closed 2 years ago
2
../src/kat: error while loading shared libraries: libpython3.9.so.1.0: cannot open shared object file: No such file or directory

#152 martavohnoutova opened 3 years ago
0
Using KAT on metagenomics data

#151 bistace closed 2 years ago
1
Contamination in GCP plots

#150 Giacomoggioli closed 2 years ago
1
K-mer sequence of k-mer with specific frequency

#149 dbau-igenomix closed 2 years ago
1
Incorrect regions extracted from kat sect with -E flag

#148 kdelwat opened 4 years ago
0
specifying the correct homozygous peak

#147 jflot opened 4 years ago
2
Linking error with RHEL8

#146 eandersonIGS closed 2 years ago
1
Error while loading shared libraries (libboost version trouble)

#145 dgroso closed 2 years ago
1
kat comp --mer_len not passed to post-processing kat_distanalysis.py

#144 bruvellu opened 4 years ago
0
KAT gnuplot png error

#143 cement-head closed 4 years ago
2
Signal 11 error at the end of kat gcp command

#142 shannonekj opened 4 years ago
4
Interpreting Heterozygosity Rate

#141 AllisonStander closed 4 years ago
4
density plots

#140 fjruizruano opened 4 years ago
0
Kat comp x-axis

#139 vmixao closed 4 years ago
2