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KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
http://www.earlham.ac.uk/kat-tools
GNU General Public License v3.0
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Kat comp finds specific kmers between 2 fastq files with the same reads not given in the same order (with a reproducible example)
#188
jfouret
opened
3 months ago
0
KAT won't plot the hist spectra
#187
criveralopez
opened
5 months ago
0
kat comp core dumped "corrupted double-linked list"
#186
alxsimon
opened
5 months ago
0
no genome size estimation result
#185
AlcaArctica
opened
7 months ago
1
NeedHelpIntepretingResults
#184
jiangqiuqiuu
opened
8 months ago
0
kmer analysis with more than 6 x ploidy level of the genome
#183
rahulrca
opened
8 months ago
0
limit X-axis of kat hist plot
#182
AlcaArctica
opened
9 months ago
1
can't install with brew
#181
rmormando
opened
10 months ago
0
Plotting issue using kat plot spectra-hist function
#180
criveralopez
opened
11 months ago
0
y axis of gcp and 'plot density' always >= 25
#179
xiekunwhy
opened
1 year ago
1
TypeError: object of type 'NoneType' has no len()
#178
xiekunwhy
opened
1 year ago
1
Help with interpreting spectra-cn
#177
Paul-Donat
closed
1 year ago
0
install LAT error
#176
biology-han
opened
1 year ago
1
numpy issue when make install
#175
rmormando
closed
1 year ago
0
Unable to install in Ubuntu 22.04 with python 3.10
#174
IgnasiLucas
opened
1 year ago
2
../lib/include/kat/pyhelper.hpp([kat::KatPythonError*] = Unexpected python error
#173
kanishka12191
opened
1 year ago
0
Adjusting X-axis in kat comp
#172
Jokendo-collab
opened
1 year ago
1
2.4.2 was tagged but not released
#171
zougloub
opened
1 year ago
0
No module named 'PIL'
#170
theo-allnutt-bioinformatics
opened
1 year ago
0
KAT comp for PacBio read and assembly
#169
herlianal12
opened
1 year ago
1
Can't compile
#168
theo-allnutt-bioinformatics
opened
1 year ago
1
malloc_consolidate(): unaligned fastbin chunk detected
#167
nityendra21
opened
2 years ago
2
Unable to interprets results
#166
naahraissa88
opened
2 years ago
0
KAT comp - issue with big genome
#165
matryoskina
opened
2 years ago
7
KAT comp stalling when making plots
#164
aaronphillips7493
opened
2 years ago
2
Can I make "kat hist" read from standard input?
#163
IgnasiLucas
opened
2 years ago
0
kat filter error
#162
huilin-al
opened
2 years ago
0
Issue with compiling KAT from the source on HPC
#161
AndriiTarieiev
opened
2 years ago
0
Issue with KAT conda package
#160
AndriiTarieiev
opened
2 years ago
1
KAT GCP plots are half white
#159
IoanaBrannstrom
opened
2 years ago
2
Update doc with exceptions to gzip input
#158
kbseah
closed
1 year ago
0
How to get two clear peaks? Heterozygous and Homozygous peaks
#157
hrpelg
opened
3 years ago
1
KAT and long reads
#156
diriano
closed
2 years ago
1
Color scale with low values
#155
Nina-pinheiro
opened
3 years ago
0
Time
#154
Brett37490
closed
3 years ago
0
Using KAT to generate the k-mer spectrum
#153
Otis-chan
closed
2 years ago
2
../src/kat: error while loading shared libraries: libpython3.9.so.1.0: cannot open shared object file: No such file or directory
#152
martavohnoutova
opened
3 years ago
0
Using KAT on metagenomics data
#151
bistace
closed
2 years ago
1
Contamination in GCP plots
#150
Giacomoggioli
closed
2 years ago
1
K-mer sequence of k-mer with specific frequency
#149
dbau-igenomix
closed
2 years ago
1
Incorrect regions extracted from kat sect with -E flag
#148
kdelwat
opened
4 years ago
0
specifying the correct homozygous peak
#147
jflot
opened
4 years ago
2
Linking error with RHEL8
#146
eandersonIGS
closed
2 years ago
1
Error while loading shared libraries (libboost version trouble)
#145
dgroso
closed
2 years ago
1
kat comp --mer_len not passed to post-processing kat_distanalysis.py
#144
bruvellu
opened
4 years ago
0
KAT gnuplot png error
#143
cement-head
closed
4 years ago
2
Signal 11 error at the end of kat gcp command
#142
shannonekj
opened
4 years ago
4
Interpreting Heterozygosity Rate
#141
AllisonStander
closed
4 years ago
4
density plots
#140
fjruizruano
opened
4 years ago
0
Kat comp x-axis
#139
vmixao
closed
4 years ago
2
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