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Hi Tobias,
I am using delly to call CNV from long-read data with the command below:
```
delly cnv -u -z 100000 -o $out/tumor.bcf -l $vcf -c $out/tumor.cov.gz -g $ref -m $map $tumor
```
Here ar…
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Hi,
We want to use WAPS to sample for one of our applications. Currently, we used WAPS and it stalls indefinitely. I have a couple of questions. It would be very helpful if you (or your team member…
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The dependence on jQuery should be removed as it is bound to confuse students.
Location: tutorial for Lab 03. Graphics.2D - Raster, Assignment 4 step 11. Can easily be refactored to vanilla JavaSc…
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The codebase currently has 2 strategies for dealing with ploidy in Pedigrees:
[1] Specify ploidy at the stage of path-sampling, which involves:
[1.1] Assigning number of specified "ploids" to …
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Hello,
I am working in surveillance of wastewater samples and I have this doubt about defining the new mutation from the wastewater samples.
is it possible to define a new mutation from a wastewater…
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Let's define:
- `c` as the number of columns (currently, `128`)
- `q` as the number of columns a node should custody (with a current minimum of `4`)
- `s` as the number of columns a node should s…
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### Describe the question.
```
@pipeline_def(device_id=0)
def dali_pipeline(image_dir):
images, _ = fn.readers.file(file_root=image_dir,
files=uti…
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In this issue, we are going to describe tasks that have been implemented so far and the remaining tasks for the project.
Training Sheet: [Link](https://docs.google.com/spreadsheets/d/1rVFx4evzS-6zE…
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Hi,
I have just started using stockR, and I must say I find the whole package and its functions a bit cryptic...I have read both the manual and the "Introduction to stockR" tutorial associated with t…
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Clustering results using k=2 clusters, for both kmeans and nmf, do not follow into clustering results for k=3 or k=4 clustering. When looking at [clustering results](https://github.com/greenelab/hgsc_…