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Hello, i am trying to install Biopython 1.70 and ran the following code:
python setup.py test
I noticed 1 failure which was:
FAIL: test_water_file (test_Emboss.PairwiseAlignmentTests)
water …
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When I attempt to align _SELENON_ RefSeq transcript NM_020451.2 with it's corresponding protein sequence (NP_065184.2), exonerate reports:
`** FATAL ERROR **: Unknown amino acid [U]`
`exiting ...`…
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Hello,
I was hoping you may be able to clarify a COG annotation question. Apologies if this is a silly question I've just struggled to find an answer and I'm quite the amateur. I've used a pangenom…
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We want to be able query for pombe GO-CAMs rather than having to manually curate files in SVN (like `pombe-embl/supporting_files/production_gocam_id_mapping.tsv`)
See also:
- pombase/pombase-cha…
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Hi,
I was able to run reorientexpress and map the stranded reads using mnimap2:
`minimap2 -ax splice -G 30k -u f $CHRLEN $strandedFASTQ `
Minimap2 reports the transcript strand in the ts tag…
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#### What is the problem?
We should register our prefix (`datalad:`) which would disambiguate the DataLad UUID(is it possible? or only by path?) to the location(s?) of the dataset.
I wondered e…
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**Integer-based scientificName**
This and many other occurrence records have an integer as a dwc:scientificName. Suspect mis-mapped data because there are evidently scientific names in dwc:occurrence…
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We are changing the source xref badge from "GlyGen" to "Data Submission" in datasets that have been submitted by a user. In these cases the src_xref_key in the datasets will need to change to either "…
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Dear team,
May this email finds you all fine.
I have a question related to using MoSEA using coordinates from a tool different than SUPPA2.
my question is should I provide the strand information …
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Dear all, (probably @melissalinkert )
we are acquiring TEM datasets (any type of specimen cryo/plastic) using SerialEM in tiled XY montages. These are stored by default in an MRC Stack file with ea…