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At the moment, uploading a new dataset to the `DATA_PATH` through command line (not through cellar UI) doesn't change the drop-down content in the [dataset selector](https://github.com/euxhenh/cellar/…
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For the guide-pooled screen,article focused on the 8,448 cells with 3 or more guides. When I was follow ,there are some issue. effect size is NaN or 0.
[/nis_home/FR-Perturb/bin/python /locald/FR-…
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Hi how can I reproduce this article and start from that aspect?
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Hi,
I used Muon to analyse my CITE-seq data. During analysis, I changed the index name to add the sample information.
When I tried to save it to h5mu file, it shows
`ValueError: DataFrame.index…
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**Hello, I currently want to reproduce the results in SEVtras using data from 15 normal tissues. When I was running the SEVtras.ESAI_calculator function, the following error occurred. I tried for a lo…
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Would you kindly provide the code of processing the data? Thanks a lot.
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Epic:
### Description
**User**: The same scientists from Use Case 2 #99 .
**Use Case**: We have confirmed that AIT99 is set up properly on our computers, and now we want to start annotating the c…
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**Describe the bug**
After performing a slicing operation on an AnnData variable(single cell data, h5ad file read using Scanpy), the program crashed. Neither new variable can be detected, nor operati…
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I've been using the same code that worked for me previously, but just started getting an error at the pySCN.scn_classify step and was wondering what I might be doing wrong or if there is an incompatib…
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### Report
Hello,
I am seeing that the benchmark datasets used mention that you are taking the "counts" layer from these datasets. However, when looking at this layer I see values being floats in…