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Freesurfer and Matlab documentation on the orginal site
https://docs.uabgrid.uab.edu/wiki/FreeSurfer
https://docs.uabgrid.uab.edu/wiki/MATLAB
are more comprehensive
but not sure how outdated…
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I run pipeshard parallel for vit-large model. The relevant code is:
```
method = alpa.PipeshardParallel(num_micro_batches=training_args.num_micro_batches,
layer_option=alpa.Auto…
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****
Hi,
I try to register images with voxelmorp using the command
%run register.py --moving temp.npz --fixed temp.npz --moved temp2.npz --model model_1.h5 --gpu 0
temp.npz (3D array between 0,1)
…
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### Description:
I am struggling to make compression work when saving a TIFF with imageio's v3 API (see the reproducing code below). From the [plugin documenation](https://imageio.readthedocs.io/en…
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![image](https://user-images.githubusercontent.com/79499756/176379518-4ec1d37b-327c-45c8-abef-81a65ecfd5d0.png)
I'm sorry to bother you. When I used my data set to reproduce your code, there was such…
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### What happened?
Autorecon 1 appears to be failing and not providing a helpful error message.
### What command did you use?
```shell
singularity run -e -B ${scratch} $IMG ${scratch}/${subj…
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There is an AttributeError when I use Fastsurfer on Docker.What should I do?
========= Creating filled from brain (brainfinalsurfs, wm.asegedit, wm) =======
recon-all -s subject -asegmerge -no…
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I suddenly started getting this error for every subject of every dataset I run. It seems to have started once I switched to v22.0.0.
Also posted here: https://github.com/nipreps/fmriprep/issues/283…
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## Summary
When running xcp-d (using output from flywheel fmriprep version 20.2.6), several crash reports are generated. All outputs seem to be present, but I am not sure if they are valid, given the…
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- MRtrix (https://mrtrix.readthedocs.io/en/latest/installation/hpc_clusters_install.html)
- Dipy (https://dipy.org/documentation/1.1.1./installation/#osx)
- Freesurfer (https://surfer.nmr.mgh.ha…