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@simongraham Hi. Thanks for helping with displaying the hover-net nuclei segmentation result.
We evaluated the hover-net performance on TCGA and our own dataset. The performance of nuclei segmentat…
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Can I run the model on MoNuSAC dataset? Since MoNuSAC dataset images have varied shapes and some are smaller than input patch 270*270, what pre-process is needed?
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**Describe the bug**
Deepcell is amazing when the image is full of cells. But where there are empty space, there will be empty (no nuclei and membrane) and huge (super big cell) prediction.
**To …
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in around the 4th code cell of 2_segmentation_and_regionprops, at `nuclei = io.imread('../images/cells.tif')` ... `io` is not defined
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@hspitzer I came up with a few points regarding the `ImageContainer`. Let me know what you think:
1. `squidpy.im.segment_crops` is unused (not expored in `squidpy.im`), as well as `evaluate_nuclei_…
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Hi, maintainer:
I slice [:20000,0:20000] from both *.svs and it's mask for a test, but they don't registered.
The tested WSI is TCGA-4J-AA1J-01Z-00-DX1.8E768211-46FC-45A4-8689-6DDEA0198D43.s…
WxpHB updated
3 years ago
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Hi, i found that the kumar datasets provided in this project is different from the original version "A Dataset and a Technique for Generalized Nuclear Segmentation for Computational Pathology" on webs…
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Hi, I've lately observed that cellpose generates very pixelated segmentations when I use newer versions of cellpose. In older versions of cellpose, segmentations were usually smooth and more precise. …
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Hi,
I cannot figure out why I run into this problem: Any hints what goes wrong
tifffile: 2020.12.8
Python 3.7.8 | packaged by conda-forge | (default, Nov 27 2020, 18:48:03) [MSC v.1916 64 bit (…
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Hi,
I've been able to use your pretrained models in Qupath and they work great, thank you so much for all the hard work you have done! I have been trying to train a model on my own data for a part…