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After last conversation on slack, I think the **scRNAseq** workflow is not in sync with the newer changes.. Maybe time to update it?
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Hi Nuno,
First of all, I'm on 0.8.5p2 so I'm sorry of you already solved this.
I noticed (renormalizing data on protein coding genes only), that the help of irap_raw2metric specifies:
-o …
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Hi,
I'm creating a Shiny website for easy visualization of single set data analyzed using seurat pipeline. I am, however, having trouble displaying the plots. I dug a little deeper and it so happen…
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Hi Pavlin! Great work. I did not know about Orange but I am working with scRNA-seq data myself (cf. your Zeisel2018 example) and I am using Python, so it's interesting to see developments in that dire…
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Any chance of an R implementation in the future? Could work nicely with other R-based processing pipelines for scRNA-Seq data (eg. scater, monocle)
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Hi Magic developers!
I kept running into the problem using R magic when it is `Computing Kernel`.
It gives error (please see the attached screenshot) :
> Error in Q$i : $ operator is invalid fo…
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Going by the issues raised, the major application of UMI-tools appears to be scRNA-Seq. It would be very helpful to have a guide to using UMI-tools in scRNA-Seq.
This should cover:
- The use of …
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Hi. Thanks for creating this tool. I'm trying to do an analysis from a pre-print on some scRNA-seq data and I think UMI Tools might be appropriate.
Here is the paper: http://biorxiv.org/content/ea…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LuyiTian/scPipe
Confirm the following by editing …
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Hello,
I'm trying to use your tool to handle our single cell drop-seq data.
The method is using paired reads but the pairing is not on the gene itself, meaning we're not doing paired end sequencing,…
Hoohm updated
7 years ago