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This should be automated somehow. All new interaction annotations will come from Canto. That may help as those annotations always have dates attached.
Original comment by: kimrutherford
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Hi,
We would like to have the following new terms:
1) copy neutral loss of heterozygosity (synonym CNLOH)
2) amplification (synonym: AMP)
3) amplification with loss of heterozygosity (synonym: amplif…
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We have recently enabled diploid mode in PHI-Canto and used it to curate a Chemistry paper #127
It would be good to write up some rules and examples of when to use this in our FAQ documentation.
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The ONT reads were basecalled using Dorada with the model `dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1`. I tried using modkit to generate CpG methylation and hydroxymethylation pileups. It turned…
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Moving discussion of linking AIRR objects of known epitope/antigen reactivity/specificity to this issue and out of #776
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Hello,
I'm calling variants using a cactus generated graph genome, generated and indexed as previously reported in another issue (#2362). Alignments and post processing is described in the issue #254…
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Hi,
I'm having this recurring issue when running bam2plink. Sometimes the script will run for some pairs and then have this error at a certain pair and sometimes it will fail with this error immedi…
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Variant QC annotations are now stored in the 'FT' field in entries, instead of the 'filters' field. This is now how WARP formatted them. As such, adding VETS Variant QC filters to the appropriate 'fil…
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Hi,
This is an awesome work! I am applying FastSMC in UKBB. For the input - genetic map file, what would you recommend one to use/generate? The described format looks like different from standard …
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Coordinates based on transcripts depend on the exon structure at least. Coding position requires also cds start and end.
Proposal: Implement TranscriptLocation, à la HGVS, by creating a class that …
reece updated
2 years ago