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In [`0e16277`](https://github.com/eldoradoio/upptime/commit/0e162773895de19c196c4cad3b774113ea0c2e43
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Todo's to make the workflow 'promethion ready'. Related to #138, #139, #140
- [x] merge basecalled bam files (e.g. basecalled output)
- [x] fetch exact dorado (server) version + model used in Min…
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Please add the following instructions to somewhere:
For FASTQ output from buttery-eel, we call guppy_barcoder which comes with the ONT Guppy package for demuxing. It seems that guppy_barcoder does…
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I wondered if dorado can do basecalling on pod5s in multiple directories. Thank you!
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Is it the final set of weights, as determined by highest number?
Need to get a bonito model exported to dorado for speed.
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Hello,
I suppose this is an easy question to answer but I have not been able to. I want to detect the 6mA in data obtained by nanopore.
This is the code I am running.
dorado basecaller ../.…
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Hello everyone!
We were using Tombo for our Methylation Analysis of bacterial DNA data. Since Tombo is deprecated we changed to dorado. I now analyzed some samples and got some interesting results…
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Hi,
I am back for another question, since I got such excellent help last time :)
I am analysing the methylation of my Cytosines and trying to decide on a threshold. I am working with a species o…
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# Issue Report
## Please describe the issue:
So I am trying to use the pre-compiled version of Dorado (downloaded from [https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.6.1-linux-arm64.…
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We find the reason a read ended to be useful info when looking at direct RNA data. Since some modifications produce higher levels of unblocking events (example: panels K, L, M [here](https://www.ncbi.…