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Currently, pattern compression is implemented on a "character level", i.e. it works with the strings as they were read from a FASTA/PHYLIP file. This has at least one unpleasant side effect: if severa…
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I get to the "preview" window, but the preview is always a black square, and if I press "Save" no output file is saved.
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Fix the persite log-likelihood functions to account for tip patterns and also the new way of handling mixture models.
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The title “Volunteers in the Clouds: an Architecture for Low Cost and Potentially Massive Distributed Evolutionary Computation” seems to suggest that the volunteers run in the cloud, but that is not t…
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Even though we specify `-threads 1` it is launching as many threads as it detects CPUS.
```
11246239 6940 6937 0 2015 pts/2 00:00:00 /bin/sh /media/VD_Research/Admin/PBS/Software/BEASTv1.8.0/b…
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I like that you've kicked this off with real code, but I hope that you're still open to re-thinking everything from the ground up. This may involve changing or replacing code that you already have, b…
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What is the best method to determine which codons are contributing to positive selection (w+) at a branch/node as determined by aBSREL? There is usually a very small percentage of sites with omega>1. …
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I downloaded a sample mnist data set into a CSV and installed TPOT and all the dependencies.
I tried running it through the command line and below is the command I ran and the results I got,
``` bas…
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I try to find some details in the reference which in the annotation of `InvertedGenerationalDistance.java`:
```
* This class implements the inverted generational distance metric.
* Reference: Van V…
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Hi Seb,
Just compiling against the CMake BRAHMS and there seem to be a few issues - mainly stemming from the fact that BrahmsConfig.h is setting a lot of stuff I'd rather it didn't... this includes a…