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Sorry to bother you again, I keep getting this error even when I installed db with conda with this line
`conda install -c bioconda perl-dbi ` but when I run it again I got the same error.
I am u…
drelo updated
6 years ago
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Ppyr1.3_LG5:14218332-14221295
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For dev site, make these files site wide files:
For all genomes, we need the genome sequence, the gff3 annotation and the genes (nucleotide and protein)
(gtf might need to be generated, @MingChen091…
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Hi,
I'm getting a lot of warnings like this:
> serialiser - orf.py:281 - WARNING - serialize - MainProcess - Invalid entry, reason: STRG.1000.1 not found in the index!
STRG.1000.1 0 3083 ID=STR…
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N-terminus extends 33 nucleotides too far. "MALK" is true start
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This is provisional, but from tests done for the paper, it looks like the published version (1.0) has higher precision than the current version (1.1). Current hypotheses for the behaviour include:
…
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Hi,
I have installed just installed `smsk_trinotate` and its dependencies it the following way:
```
git clone https://github.com/jlanga/smsk_trinotate
cd smsk_trinotate
conda env create --nam…
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Hello Brian,
I'm using the latest release of PASA (2.3) and noticed that the ".valid_gmap_alignments.gff3" file is empty. GMAP seems to have run without a problem, since the "gmap.spliced_alignment…
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Hello!
I have the following error message when excecuting LINKS
```
Can't load '/data2/bioProgs/LINKS/releases/links_v1.8.6/./lib/bloomfilter/swig/BloomFilter.so' for module BloomFilter: /data2/b…
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Hi there
Thanks for developing this great tool for annotation!
I am trying since a bit to annotate a non-model organism genome (orchid bee, >500Mb assembly, rather fragmented, i.e. lots of small…