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** If this is a question and not a bug report or enhancement request, please post to our google group at https://groups.google.com/forum/#!forum/monocle-3-users**
**Describe the bug**
I'm running …
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I am trying to use leidenalg in FindClusters function. The function is running correctly on small dataset like `pbmc_small`
However, when running
```
dim(object)
[1] 23097 37996
object
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@Koncopd, I just tried out the new release candidate for umap and get errors though out the ingest tests. It looks like `umap` now relies on `pynndescent` and some functions are no longer available. H…
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I am new to graph based clustering algorithms and I was hoping you could help me out. I want to use this package to try to match the louvain clustering used in an R pacakge called seurat. They use mod…
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---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
in
1 import giniclust3 as gc
2…
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Hello,
I am so sorry if my question is inappropriate. I want to use MCL to cluster my network (about 17000 nodes), but kernel crashes everytime (I have 16 GB RAM).
Another library that does MCL clus…
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Hey Volker!
I have some weird plotting issues for the differential kinetics results. Unfortunately this is not reproducible with your pancreas example (no error there).
Looks the the groups_to_b…
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Here's a go at describing how to unify the ideas in both #2 and #3. My assumptions are that we need to specify:
* Relations between Abstract types (`Graph`, `DenseArray`, etc) and Concrete types (…
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Hi, and thank you for your tutorial! I've been following a workflow from the Theis lab (https://github.com/theislab/single-cell-tutorial/blob/master/latest_notebook/Case-study_Mouse-intestinal-epithel…
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Hello,
Apologies if my questions sound trivial but I am completely new to python, and I am a biologist before being an occasional R user (so far... but hopefully will be able to play with python so…