-
_From @olgabot on July 6, 2014 22:55_
Hi @jbenet and @maxogden! Thank you so much for the time you took to meet with @mlovci and me this weekend. Here's an overview of our current data management sit…
-
From email chain with Rob:
```
Here’s a few stories based on [Treehouse’s](https://treehousegenomics.soe.ucsc.edu/) current Jupyter analysis [notebooks](https://github.com/UCSC-Treehouse/jupyterhub)…
kozbo updated
7 years ago
-
```
rna_pdb_tools.py --rpr 1ehz.pdb --replace-hetatm
Traceback (most recent call last):
File "/Users/magnus/miniconda3/bin/rna_pdb_tools.py", line 7, in
exec(compile(f.read(), __file__, 'ex…
-
There appears to be protein coding sequences in RNAcentral. For example:
http://rnacentral.org/search?q=%22protein%22%20and%20not%20%22non-protein%22
http://rnacentral.org/search?q=hypothetical%20…
-
Hi rMATS team,
I need to use rmats-long to analysis my long-read RNA-seq data. Can I use rmats2sashimiplot to visualize my results?
Thank you.
-
-
Hi,
I am running the example breast data and the correlation between gene expression and chr1 canonical variables is different if I do it myself versus the correlation values calculated by PMA. Wha…
-
i am run GRN_infer.md. when i run adata_RNA,adata_ATAC=get_adata(matrix,features,barcodes,label)
>>> adata_RNA,adata_ATAC=get_adata(matrix,features,barcodes,label)
Traceback (most recent call last):…
-
Hello,
I have been running an analysis in Seurat 5 that is partially run on a local machine and a remote server, and I've been trying to work out how to change the address of where the BP cell gen…
-
Hello,
I have another question concerning this pipeline.
The m6A accessibility and level are calculated using in vitro samples : do you think it is possible to estimate the m6A accessibility in a…