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My favorite instance of the Mol* viewer is the one on the PDB website. See example: https://www.rcsb.org/3d-sequence/1NQ2
I think we may want a similar design as this.
Some docs: https://www.rcsb.or…
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I have several done files (in alphabetical order: fastqs, remapping, retagging, variants, and vartrix) so think I'm stuck at the clustering stage (also as clusters_tmp.tsv is 0 bytes)
```
the web …
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As you know some variants have multiple NM_ coded transcripts. For example in this variant http://myvariant.info/v1/variant/chrX:g.153296529G>T, there are 7 different HGVS coding transcripts.
Is My…
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- [x] relationship between signalling footprints and pathway expression
- [x] overlap
- [x] which signal activates transcription of which pathway?
- [x] ~~which pathways are more posttranslation…
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For some of our analyses it would be helpful to be able to filter a VariantCollection to only those variants that fall within the intended capture targets.
Example intervals list:
```
[odonnt02@mine…
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In utilizing JBrowse 2/GWAS plot for some GTEX plots, I have encountered a difficulty when rows of data exceeds several millions, which cause TIMEOUTs or browser choke. I was able to overcome this by…
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Hi,
First and foremost, I'd like to thank you for designing such wonderful program. Nevertheless, when I run `database_annotation.pl`, I receive the error `ISOWN/bin/qpipeline: Permission denied`. Th…
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This is likely not an app issue but will place this here.
If I go to:
http://monarchinitiative.org/disease/DOID:9258
I can see several models contain the Pax3 gene. However if I go to the gene page…
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Hello,
I have several questions regarding the ri, as my queries don't behave as I would expect them to.
1. Is there a way in beacon2-ri to specify the reference sequence name as specified in th…