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I get this Error message when analyzing DIA mzML in both modes either
1) [DIA_SpecLib_Quant, 2) DIA_DIA-Umpire_SpecLib_Quant
Here is the beginning of the error message. Attached is the log
E…
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Hi, can someone help me? I encountered the following error while using the xcms package's findChromPeaks function to process XML-type data:The error message is: "Error in (function (classes, fdef, mta…
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### Description of the bug
```
-[nf-core/quantms] Pipeline completed with errors-
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:LFQ:ID:DATABASESEARCHENGINES:SEARCHENGINEMSGF (UPS1_250am…
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Thank you to all the developers for their hard work! Recently, I have been learning the basics of OpenMS, and I have been using the data PXD015828 from PRIDE as a practice dataset. During this process…
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e.g. we don't need the OpenMS source folder any more (it is currently kept because it contains the share/folder).
TODO:
- set the cmake flag -DCMAKE_INSTALL_PREFIX when generating the build system…
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in this configuration:
i.e. when `align_sampling` is false
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### Description of the bug
```
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:DIA:DIANNCONVERT (PXD024043-diaPASEF-1ng.sdrf)` terminated with an error exit status (1)
Command executed:
diann_…
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I've run into an issue with the EGHTraceFitter in FeatureFinderAlgorithmPicked. I can't get sensible output from fits. As an example, try to replace the #if block at line 760 in FeatureFinderAlgorithm…
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### Description of the bug
```
nf-core/quantms execution completed unsuccessfully!
The exit status of the task that caused the workflow execution to fail was: 1.
The full error message was:
…
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see https://github.com/OpenMS/OpenMS/issues/7062
see https://github.com/OpenMS/OpenMS/blob/doc_deconv/src/pyOpenMS/pxds/Deisotoper.pxd
see https://github.com/OpenMS/OpenMS/blob/develop/src/openms/so…