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@simongraham Hi. I tried the hover net inference on some patient WSIs. I can run the code sucessfully, and get a .npz file as the result. But I don't know how to interpret it, and overlap the predicti…
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In the RNN_train.py, assume s as 10, the out of __getitem__() in rnndata should be [10, 3, 224, 224] for each WSI.
58
59 def new_lmdb(location, name, map_size_bytes):
---> 60 return lmdb.open(location + name, map_…
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I tried to run the following command:
```
python create_patches.py --source $SOURCE_DIR --save_dir $SAVE_DIR --patch_size 256 --seg --patch --stitch
```
It processes the first image fine, but t…
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> No response. He's deactivated his communication system.
log of `generate-new/bin/vk`
```
+ set -e
+++ dirname ./scripts/update.sh
++ cd ./scripts
++ pwd
+ DIR=/home/runner/work/vulkan/vulkan/script…
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您好，我在使用您提供的代码跑出来的性能与论文差距较大，我想知道，您在训练时，是根据在valid上选择的吗？如果是 是根据哪些指标选择的了， 我发现有时候两个模型相比，acc差不多 但是在test上的分数却差异比较大？
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Hi Manuel,
would it be possible to have one sample image to test your segmentation script?
Thanks
Giovanna
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Hi, I'm using build 113 and able to generate BFs with no issue:
```
bagel/BAGEL.py bf -i $fc -o "bagel_final_20200205/bf_${org}_CEGv2_NEGv1.tsv" -e bagel/CEGv2.txt -n bagel/NEGv1.txt -c $i
bage…
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> No response. He's deactivated his communication system.
log of `generate-new/bin/vk`
```
+ set -e
+++ dirname ./scripts/update.sh
++ cd ./scripts
++ pwd
+ DIR=/home/runner/work/vulkan/vulkan/script…