hart-lab bagel issues - Githubissues

hart-lab / bagel

BAGEL software

MIT License

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Example Run - QC Fails Immediately

#32 tiganolab opened 2 months ago
0
Update precalc_library_alignment_info.py

#31 rooeikim opened 10 months ago
0
Update precalc_library_alignment_info.py

#30 rooeikim closed 10 months ago
0
per-guide BFs output file column order

#29 t113admin opened 2 years ago
0
BAGEL.py pr error

#28 niekwit opened 2 years ago
0
Example not working?

#27 yesitsjess opened 3 years ago
1
Bioconda recipe

#26 mjsteinbaugh opened 3 years ago
6
Syntax error

#25 ADvorkinGheva closed 3 years ago
2
Zero values at T0

#24 ADvorkinGheva closed 3 years ago
2
precalc_library_alignment_info.py - Bug fixed

#23 rooeikim closed 4 years ago
0
errors when running precalc_library_alignment_info.py

#22 acousticus closed 4 years ago
4
Comparing library+DMSO vs library+treatment

#21 yesitsjess closed 4 years ago
2
Build 115

#20 rooeikim closed 4 years ago
0
Tags/releases

#19 t113admin opened 4 years ago
1
Would it be possible to make the normalisation optional?

#18 t113admin opened 4 years ago
2
pipeline_bug_fix

#17 rooeikim closed 4 years ago
0
Library update

#16 rooeikim closed 4 years ago
0
Build 114 python3

#15 rooeikim closed 4 years ago
0
ValueError: Location based indexing can only have [integer, integer slice (START point is INCLUDED, END point is EXCLUDED), listlike of integers, boolean array] types

#14 yesitsjess closed 4 years ago
3
TypeError: only length-1 arrays can be converted to Python scalars

#13 yesitsjess closed 4 years ago
2
bootstrapping vs cross-validation

#12 igordot opened 4 years ago
1
IndexError: list index out of range

#11 igordot closed 4 years ago
2
Update BAGEL.py fc options docs

#10 igordot closed 4 years ago
0
Build 113 python

#9 rooeikim closed 5 years ago
0
Issues with regression failing in Bagel 2. Version 0.91 still supported?

#8 mjafin opened 5 years ago
2
Code collaboration/improved argument parsing with click

#7 jmcgonigle closed 5 years ago
3
Build 112 python3

#6 rooeikim closed 5 years ago
0
Build 112

#5 rooeikim closed 5 years ago
0
Calculating F-measure (BF = 5), which is the harmonic mean of precision and recall at Bayes factor 5.

#4 rraadd88 closed 5 years ago
3
What if there are multiple replicates for control condition?

#3 rraadd88 closed 5 years ago
3
FC_THRESH in BAGEL.py was use of len instead of sum intentional?

#2 hannahkimincompbio opened 5 years ago
1
Syntax error

#1 kdelint opened 5 years ago
2