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Hi,
How to replace feature with Transcript name column in the table of differentially expressed transcript between sexes rsimilar to [Table3](https://www.nature.com/nprot/journal/v11/n9/full/nprot.20…
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Dear Jon,
After I succeed in run sample data, I still failed run my assembly.
When I followed the tutorial to run
`funannotate train -i xenia.contigs.fasta -o fun -s ../../../transcriptome_based_…
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Hi,
when running mikado serialise, I get this error:
ValueError: Invalid frame specified for ID=Gene.60462::STRG.10290.2::g.60462::m.60462;Gene.60462::STRG.10290.2::g.60462;ORF_type:complete_len:328…
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I am trying to use funannotate pipeline to annotate an annelid genome we just got. I have a question about log file. In you wiki introduction of the pipeline, it mentioned the pipeline will align unip…
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Hi there,
I am having an error with the "util/cdna_alignment_orf_to_genome_orf.pl" utility script. It seems to do something for about 10 seconds once started then crashes with this error:
```
…
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Hi nextgenusfs,
I'm getting the following error when I run funannotate predict:
"Fasta headers in BAM file do not match genome, exiting."
The command looks like this:
```
funannotate pred…
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Installed dammit in a virtual env like described here: https://angus.readthedocs.io/en/2017/dammit_annotation.html
Any hints about the error?
```
(py3) [macmanes@premise frog]$ dammit annotate …
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I was trying to install libtorrent-rasterbar. I've successfully installed it before, not sure why it doesn't work now.
The exact copy-paste from command to error on Terminal:
```
$ brew install l…
ghost updated
6 years ago
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It seems Transdecoder looks for earlier output files in the wrong location.
- `/util/start_codon_refinement.pl` at line 80 uses a not necessarily correct path
- i started Transdecoder on a fasta fil…
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Dear Jon,
I have launched funannotate predict with the following parameters, and it has failed:
```
funannotate predict -i 901.masurca.scf.fasta -o 901.fun_out --species "Linum usitatissimum" -…