-
# Issue Report
Hi I was told that I could run dorado on my previous sequenced pod5 files where I used the older phased out EXP-NBD104 kit , but used the SQK-NBD114-24 kit, because the barcodes have t…
-
Dear @Adoni5 @mattloose
I hope you guys are doing well. I am trying to implement the new version of readfish with dorado on flongle playback data. But, I am getting the same error:
"ValueError: cha…
-
-
We try using readfish to switch off barcodes after they collected enough data, but somehow we see no effect. We are also not sure if the configuration file is set up correctly. Can you provide an exam…
-
Hi,
For my duplex-called reads, I get
```
$ A=$(samtools view all.bam | grep -c 'dx:i:0')
$ echo $A
622019
$ B=$(samtools view all.bam | grep -c 'dx:i:1')
$ echo $B
304276
$ C=$(samtools view…
-
this is a problem when some project is already sync'ed to the final destination, as dir already exists, it breaks the snakemake rule
https://github.com/maxplanck-ie/nanoporeReads_dataTransfer/blob/…
-
Checking hash of ToDesk_Setup.exe ... ERROR Hash check failed!
App: dorado/todesk
URL: https://dl.todesk.com/windows/ToDesk_Setup.exe#/dl.7z
First bytes: 4D 5A 90 00 03 00 00 00
Ex…
-
Hi Dorado team,
I have two questions about the mRNA modifications in the new dorado release 0.7
1. For the pseU modification, is it for pseudouridine or N1-methylpseudouridine?
2. Is it pos…
yul96 updated
3 months ago
-
# Issue Report
## Please describe the issue:
I want to correct reads.
## Steps to reproduce the issue:
```shell
cd /lizardfs/guarracino/tools/
wget -c https://cdn.oxfordnanoportal.com/softwa…
-
# Issue Report
## Please describe the issue:
I want to estimate poly-A during basecalling for direct RNA-seq data and have bam file with adapter-trimmed reads as output. But using option --estim…