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### Assembly Region
chr13_PATERNAL:11182275-11194954
### Assembly Version
v0.7
### hifi_evidence subregions
11189249-11190272 (Clipped)
11182275-11194954 (Low_Qual)
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Dear Shujun,
Sorry to bother you again. I had got successful runs in June 2021 with EDTA, but now no idea why EDTA complains about `RMblast engine is not installed`. I thought it is probably due to…
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Copied from https://github.com/rmhubley/RepeatMasker/issues/50#issuecomment-766803634 by @Tiramisu023:
> ```
> RepeatMasker version 4.1.1
> WUBlastSearchEngine::setPathToEngine( /public2/users/li…
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Thank you for this great tools !
I have met some problem, could you help me ?
I installed EDTA through `conda`,
by two ways:
```
#the first way
git clone https://github.com/oushujun/EDTA…
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Hi
I want to annotate an animal genome. First I created a pan-TE library manually according to this article (https://doi.org/10.1093/molbev/msac080). Then I run RepeatMasker (sensitive mode) and th…
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Hi, thanks for providing this helpful pipeline! I installed earlgrey3.2 with conda. My run died at the TEstrainer step with the following error message:
>
Splitting run 1
Initial trf check for …
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Dear @panchyni @shinhanshiu
Hello there! This is a very good tool that suits my needs very well and I look forward to referencing it later. I'm having a RepeatMasker problem while running the test…
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Hi,
I tried to found SVs in a phased assembly genome of HG002, and found some insertion and deletion corresponding to ref (GRCh37) are from different chromosom. For example, an ins on chr1-34044-34…
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Hello,
I was trying to use Earl Gray for my genome but at the end the end the execution was halted due to error below:
FileNotFoundError: [Errno 2] No such file or directory: '/home/edelab/pacbi…
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Hello Developers
We have tried to use Busco to test the completeness of an Australian wild rice genome before and after annotation with Braker3 (with RNA-seq support from the leaves). The genome qu…