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Hello--I'm testing dropEst on a dataset generated with the 10X V1 chemistry (https://support.10xgenomics.com/single-cell-gene-expression/sequencing/doc/specifications-sequencing-requirements-for-singl…
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Hi Kevin, sorry to bother you here and misuse GitHub :) but I did not know how to reach you.
I am working with scaden and I need to do some tests.
I am struggling to obtain the test data to reprod…
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Hi,
I am trying this out on the example visium10x dataset for prostate cancer (https://www.10xgenomics.com/resources/datasets/human-prostate-cancer-adenocarcinoma-with-invasive-carcinoma-ffpe-1-stand…
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Hi,
I'm looking for annotations for the 68K PBMC dataset that corresponds to Fig 3 in Zheng et al.
I downloaded the kmeans clustering labels for the 68K PBMCs from this site (https://support.10…
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istar is a really nice work!
But I have the following concerning about applying istar to 10× Visium data.
① Usually, the output of 10× Visium data include a folder named spatial, which containing…
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
heylf updated
6 months ago
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Move to bundles inner entity since the scope of the aggregate is the bundle not the entire project.
Reproduction:
- Aggregate dates included in `projects` inner entity from `projects` endpoint (g…
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Hello,
I am trying to subset my bam file for each barcode. I have around 20k cells and each of their barcode is in a directory. I have been using the code below to execute subset-bam. It takes arou…
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- [ ] have a cell_ranger root with subtypes
- [ ] move the make config file modulate be generic/shared for arc and multi
- [ ] count
- [ ] multi
- [ ] mkref
- [ ] mkgtf
- [ ] mkvdjref
- [ ] mkc…
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With the "pre-mRNA" GTF, there are no splice junctions, which could cause *alignment* issues in CellRanger's snRNA-seq workflow, as discussed here:
https://github.com/10XGenomics/cellranger/issues/7…