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For interchanging structural variants.
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Hi,
thanks for devoloping this tool!
I'm trying to run citecount with 10xGenomics 5kPBMC public data as a test for the tool. in principle, it should work as i have specified a trim of 10. I also u…
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Hi scDesign3 developers,
Thank you for maintaining the amazing tool!
When I was simulating the data from https://www.10xgenomics.com/resources/datasets/mouse-brain-serial-section-2-sagittal-anter…
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Hi, BAVARIA is a very interesting tool. But I have some confusions when I reproduce results of integrating cells from 10X Genomics and Cusanovich 2018 datasets. I tried to use and fix your code, but i…
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Hi,
I am trying this out on the example visium10x dataset for prostate cancer (https://www.10xgenomics.com/resources/datasets/human-prostate-cancer-adenocarcinoma-with-invasive-carcinoma-ffpe-1-stand…
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
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Hello--I'm testing dropEst on a dataset generated with the 10X V1 chemistry (https://support.10xgenomics.com/single-cell-gene-expression/sequencing/doc/specifications-sequencing-requirements-for-singl…
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Hey guys!
I am running TRUST4 on 10xGenomics RNAseq data. Especially, we make use of the AIRR file for our post-processing analysis.
For a QC protocol, we require the `cell_ids`, however I see tha…
mapo9 updated
6 months ago
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Have you considered using a perfect minimal hash function (e.g. bbhash) to reduce your index size?