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Hello David,
I encountered the following issue while running OrthoFinder: "ERROR: Species tree inference failed."
The command I used is: orthofinder -f ./data -t 24 -a 10 -M msa -S diamond -A m…
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**1. I mapped long reads to the graph *gbz.gfa using graphAligner and got the gam file. I wanted to to SV calling and genotyping
I ran the below command
apptainer exec cactus.sif vg pack -t 64…
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The graphics (this concerns all graphs, pie charts, etc.) should be exportable in a much higher resolution, e.g. as PNG. The current resolution of the graphics is insufficient even for a PowerPoint pr…
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I was trying to perform global alignment on 887 fasta files. But it's giving me this error-
_Loading the graph...
Analyzing the graph...
[.Command terminated by signal 9
SibeliaZ-LCB: 3450.12 s…
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I'd like to train a model on reverberant speech using the alignments generated from the corresponding anechoic data. Currently, I'm doing something similar to TIMIT_joint_training_liGRU_fbank.cfg, whe…
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Adjust the footer on IOS
Adjust graph alignment
Adjust the reaction icon for IOS
Adjust spacing for Android
Make alignment based on phone dimensions rather than hard-coded values
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Hi David,
I'm using Orthofinder to analyze 19 species, and the mission is stuck. The supercomputer I rented has been running for a dozen days and still hasn't run 19 species. The commands I use are a…
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Grab the files in [problem.tar.gz](https://github.com/vgteam/vg/files/10573167/problem.tar.gz) and run `command.sh` which does:
```
vg align -s "$(cat seq.txt)" --pinned --json cutnode.vg
```
…
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Hello,
There seems to be a step missing in the wiki on viewing, in the [viewing alignments](https://github.com/vgteam/vg/wiki/visualization#viewing-alignments) section. In the last line of code, `cyc…
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In CPANG19, many students wanted to project a complex graph (not even alignments to it, but the paths in it) out to a VCF file.
It seems like `vg call` could be able to do something like this, shou…