medvedevgroup SibeliaZ issues

medvedevgroup / SibeliaZ

A fast whole-genome aligner based on de Bruijn graphs

http://medvedevgroup.com/

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issues

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SibeliaZ causes my Ubuntu session to close

#51 ghost opened 1 year ago
0
question about LCB determination

#50 0xaf1f opened 1 year ago
0
Getting alignments after running with "-n"

#49 thekswenson opened 1 year ago
0
# running issue

#48 kiwijiji opened 1 year ago
0
sibeliaZ outputs

#47 runxuan opened 1 year ago
2
PackagesNotFoundError: The following packages are not available from current channels: - sibeliaz

#46 ne1al opened 1 year ago
4
Unexpected output

#45 jjoets opened 2 years ago
1
Updates for TBB oneapi and C++11

#44 dpryan79 closed 2 years ago
0
Question about block_coords.gff output

#43 jdwinkler-lanzatech opened 2 years ago
0
(support oneTBB) fatal error: tbb/mutex.h: No such file or directory

#42 thekswenson opened 2 years ago
3
Q on coverage, multi-genome alignment, and maf2synteny

#41 ohdongha opened 2 years ago
4
Apply the tool to virus

#40 Alice-yyt opened 2 years ago
4
is it suitable for the very big genome?

#39 AlisaGU opened 2 years ago
2
support gzip'd input fasta

#38 nick-youngblut opened 2 years ago
1
Conda installation doesn't include maf_to_gfa1.py

#37 syngnathid opened 2 years ago
2
more detailed description for output

#36 Alice-yyt opened 2 years ago
1
please include ##sequence-region pragmas in blocks_coords output

#35 0xaf1f closed 3 years ago
4
Installation issues

#34 cmeesters opened 3 years ago
2
SibeliaZ/spoa/vendor/bioparser/include/bioparser/parser.hpp:124:19: error: 'gzFile_s' was not declared in this scope

#33 dukecomeback opened 3 years ago
0
How would it deal with phased genomes?

#32 ghost closed 3 years ago
0
free -w erro

#31 dongyangzheng closed 3 years ago
0
bash: line 11, 12 and 13: No such file or directory

#30 pipecedeno opened 3 years ago
9
Large genome files

#29 elissaralam opened 3 years ago
4
twopaco: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory

#28 Karimi-81 opened 3 years ago
4
Inaccurate coordinates in MAF file

#27 smallfade opened 3 years ago
2
Error when using sbatch

#26 smallfade closed 3 years ago
1
How can I create UCSC a bigMaf track from sibeliaz .maf?

#25 motutaj opened 3 years ago
2
twopaco: symbol lookup error

#24 tderrien opened 3 years ago
2
time should be conda dependency

#23 cjfiscus opened 3 years ago
5
command terminated by signal 9

#22 ShoumikSaha opened 3 years ago
1
Reduce number of files created?

#21 jeremylp2 opened 3 years ago
6
Visualization of output and maf_to_gfa1.py TabError: inconsistent use of tabs and spaces in indentation

#20 devenderarora closed 4 years ago
7
Validation in Bacteria

#19 noahaus opened 4 years ago
10
Command terminated by signal 11 (Segmentation Fault)

#18 ShoumikSaha opened 4 years ago
1
IndexError: string index out of range

#17 Boer223 closed 4 years ago
10
Are there a script to make circos plot?

#16 baizixiansheng opened 4 years ago
1
Installation issues

#15 LeebanY opened 4 years ago
8
TabError: inconsistent use of tabs and spaces in indentation

#14 housw opened 4 years ago
1
2 problems of sibeliaz in my experiment (Bug or not ?)

#13 liaoherui opened 4 years ago
22
Empty MAF file in output

#12 ShoumikSaha opened 4 years ago
3
I got the problem about the out put

#11 LLS007 opened 4 years ago
5
Redundancy and contamination analysis on assembly

#10 sivico26 opened 5 years ago
2
make install step : ";"

#9 eylenth opened 5 years ago
7
Feature request: xmfa format

#8 matthieu-haudiquet closed 5 years ago
3
sibeliaz :: spoa call code duplication

#7 EricDeveaud closed 5 years ago
1
Overlapping MAF blocks

#6 fbemm closed 5 years ago
2
Genome size

#5 RenzoTale88 closed 5 years ago
9
Add multi Fasta files parsing

#4 iminkin closed 5 years ago
1
Input file format

#3 tommathers closed 5 years ago
5
Added missing spoa binary compile flag.

#2 fbemm closed 5 years ago
1