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Summarizing a conversation I had with @larsoner during MNE-sprint.
## Current MNE BIDS coord frames/systems implemented
MNE's `mni_tal` == `fsaverage`, or `MNI305` space in BIDS.
Everything …
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Benchmark the selected experiments described in:
[Balakrishnan, G., Zhao, A., Sabuncu, M.R., Guttag, J. and Dalca, A.V., 2019. Voxelmorph: a learning framework for deformable medical image registrati…
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Hi,
I saw that there were example templates for adults and kids in the repo. Based on my understanding, it is better to have a template for each new cap in the offline step. How can I make a templa…
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Hi,
I'm running Fmriprep on patients with huge brain lesions, and I got this error for two of my patients.
This is the code I'm running: **fmriprep-docker /home/shymaa/Desktop/my_dataset/Participan…
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Below is an updated proposal for BIDS-compatible sct_testing structure:
~~~
center_study/
└── dataset_description.json
└── participants.json
└── participants.tsv
└── derivatives
└── label…
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## Description
This issue will be used to centralize the main discussions regarding our standardization strategies. The ultimate objective is to enable the execution of BIDS validator scripts withi…
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### What happened?
Error during SYN SDC (node is named `epi_merge`). Crash is not isolated to any participant in particular, as most subjects fail (but a few make it to the end without errors; hard…
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[This myelin water imaging atlas](https://sourceforge.net/projects/mwi-spinal-cord-atlases/), developed by the UBC group, is already aligned with the PAM50 template, and hence could be made easily dow…
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I am trying to open a .nii.gz image. For a specific set of 'affine' matrix, ITK snap throws the` Image has an invalid orientation (code IRI)` error. The header seems correct (Right-to-Left, Anterior-…
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### What happened?
After executing fmriprep, CITATION.md contains multiple versions of some sections. The references are missing. See Additional information.
We are guessing this is due to differe…