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Hi,
Unfortunetely I've got a bug this time as well.
I'm using command-line aptasuite-0.5.3 via Windows PowerShell.
The files contain real-data derived subsets with 10000 reads each (forward and rev…
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Hi,
Awesome progress on the GUI!
I've been re-analysing some of my data with the v0.8.4 release but when I run AptaMUT the window that opens is empty and there is no Log score:
![image](htt…
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Due to a bug in sorting the aptamers, sometimes the screen loads indefinitely. See (comment)[https://github.com/drivenbyentropy/aptasuite/issues/12#issuecomment-366445887] in #12.
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Hi,
So I've tried to use the GUI to analyze real-data derived sequences from one of the rounds from my selection. The file is quality-checked fastq after paired-reads joining done elsewhere.
I setup…
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When the clusters are already computed and I press the "Run AptaCluster" button, I get prompted for confirmation (yes), then the "loading" icon is displayed in the top-left corner of the app (and it m…
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After the motif analysis (works fine now, thanks!) the main windows are not scaled properly - it seems that the bottom of the window is below the edge of the screen and I can't really help it. Also it…
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Hi,
The GUI produces an error when trying to display a motif analysis. I feeded it with sample data (20k sequences in two files), run the clustering and AptaMotif at alpha=2 and kmer=6. The analysis …
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Hey,
When i am parsing my data (which is kind of artificial) there is some entries that are classified as "invalid alphabet". Meanwhile i can't share my FASTQ files, but you might elaborate what i…
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Hi,
"File >> New experiment" works great on my PC but when I am trying to do so on my mac(java 9.0.1
Java(TM) SE Runtime Environment (build 9.0.1+11)
Java HotSpot(TM) 64-Bit Server VM (build 9.0.…
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Hi,
After running the clustering, I get a table of clusters with their IDs and counts on the left of the window.
![image](https://user-images.githubusercontent.com/32843053/36314173-460e88c4-1334-11…