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**Describe the bug**
**To Reproduce**
[failed_conformer_generation.sdf.zip](https://github.com/user-attachments/files/17706953/failed_conformer_generation.sdf.zip)
```python
from openeye i…
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Why under Windows Server 2003 Standard SP2 VL (x86), Supermium 126.0.6478.254 R4 crashes on first launch after login when only 26,8 GB of 150 GB are free on the C: drive? Supermium only starts on the …
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As far as I know, the only current way to create a ghost/dummy atom is by creating one of a normal element, then changing the element to `Xx` in either the coordinate editor or `Atom Properties`.
W…
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Also, is the obtained "CG molecule" still flexible if the input molecule was?
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is it possible to have a modification that adds an additional bead to the given residue? Eg. if we have a phosphoserine, we can't give a single letter aa code in a fasta file, but could use the `-mod`…
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**Problem**: Currently, the Cal.com embed isn't properly styled
Here you see the issue:
*…
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Here is one example (`PDBDEV_00000089`):
```
# …
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```
3.10.0 (default, Nov 10 2021, 13:28:23) [Clang 12.0.0 ]
CPython
macOS-14.0-arm…
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**Describe the bug**
When mapping `gufe` protein components that were built using multimeric PDBs, I'm observing that the map is only done to a part of the multimer, apparently only one of the monome…
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Hello,
I have 1 root project which depends a slave project (git submodule).
- In the root project there is a composer.json and a vendor.
- In the root/slave_folder there is a composer.json and …