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**Describe the bug**
Flowing the instructions, I chose the --keep-up 1 to callpeak with macs2 for bacterial ChIP-Seq data. But, it reported "Too few paired peaks So I can not build the model! ...". T…
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Hi Nick,
I'm using Gubbins v3.3.5 as indicated below:
```
run_gubbins.py $PREFIX-CLEAN_NoRef.aln --first-tree-builder iqtree \
--tree-builder iqtree \
--tree-args " -T…
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Hello !
I'm trying to use pyMLST tool, which seem exactly what I need, but I don't understand how to make 1 database with some species to a specific analysis (from public database as cgmlst or pubm…
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Hi,
Thanks very much for the benchmark -- interesting and in line with our in-house findings.
Now, small question. This is all based on simplex reads? Did you use duplex_tools to split reads? Ac…
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I've searched for a while, but all I find is very old threads with many confused people, so I figured I will ask here.
Apparently, bowtie2 and bwa do not report NH tag, which supposed to label how …
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Use cases:
- Storage (long-term)
- Storage (short-term)
- Streaming
- Random access
- By class
- By genomic range
Metrics:
- Compression ratio
- Compression speed
- Decompression speed…
voges updated
3 years ago
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Great tool! I have a quick feature request. An option to output a presence/absence matrix or similar output would be very useful.
On a similar note, do you know of any software that would achieve …
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Hi all,
As [discussed on the mailinglist some time ago](http://dev.list.galaxyproject.org/odose-td4670198.html) we kindly request your help to make the ODoSE pipeline available to more users easily…
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Hello to the pagoo team,
First, my congratulations on the great work made on the development of pagoo R library.
The main question I want to put in this forum is in the following:
1) Is ther…
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Firstly, thanks a lot for your excellent tool! It's really cool!
This is my question:
Currently, I have three files, A.fq, B.fa, C.fa. And I want to calculate the distance between A.fq and B.fa,…