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bedToBdgBw.sh was use macs pileup to generate pileup track (bw,bdg) from input reads (bed) with reads extend half of window size in both direction,such as : macs2 pileup -i $input -B --extsize $[windo…
-
```
What steps will reproduce the problem?
1. From a freshly booted VM, I run the following setup script:
cd netmap/LINUX
sudo rmmod veth
sudo insmod netmap.ko
sudo insmod veth.ko
cd build-apps
sudo …
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Hi folks,
We had trouble processing some data with 2.1.1.20160309 so we ran instead with 2.1.2.1. In another test we are seeing what look like significant differences in results between versions …
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I'm running hichipper on some samples and I'm interested in the background corrected anchors that hichipper is finding (not the loops). I can see "anchors.bed" file and I also keep the temporary files…
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Hi,
I read your Nature publication (https://doi.org/10.1038/s41467-018-07771-0) and would love to generate aggregate single cell profiles in figure 3A and 4D's bottom panel for my data.
Could …
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Hi,
I've analysed Medipseq data using MACS2
here is my script:
macs2 callpeak -t Tumor_rmdup.bam -c Control_rmdup.bam \
-f BAMPE -g hs \
-p 0.01 \
-n RCC10_L4 \
--bdg \
--outdir ${OUTPUT_D…
-
```
Please describe the desired enhancement
I am a student from ****** ******. I downloaded your iMRMC software and would
like to use it to analyze a dataset. My dataset includes 10 readers, 1 modal…
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```
Results of face-to-face with end user:
After performing analysis on reader scores, the GUI is a nice way to see the
data, but I need a written report. PDF would be nice, especially if it was
un…
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Hi @chrisjsewell I would like to ask if this something which can be fixed in `v0.4.0`, or do you have any workaround/solution? :)
What I've found problematic for me is that the internationalization…
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Hello,
I am interested in generating signals, and as I understand to do that I need to have files in bedGraph format. I understand that to generate bedGraph files I need to call callpeaks, however, I…
ghost updated
8 years ago