-
I know there exist other programs that can do the conversions. However, it can get very time-consuming to set up an analysis pipeline where each program requires another file format. :-(
Maybe we cou…
-
I was thinking we could demo [Open Science Framework](http://osf.io) as a place to do closed collaborations that could then => open upon publication.
what other demos should we do? figshare? twitte…
-
Hi everyone,
I am having trouble using this pipeline apparently at the step of cutadapt.
For my analysis I submitted already trimmed fastq files, and so I left empty the adapters field in units.…
-
Hi Zulko,
I also had problems with ssh-keyscan commands,
but after commenting them out I got npm install issue:
`ERROR: Service 'vue' failed to build: The command '/bin/sh -c npm install spa-http…
-
According to the docs:
```
Use PATRIC's Genome Annotation Service: https://patricbrc.org/app/Annotation.
For detailed instructions, Follow the instructions under the PATRIC genome annotations s…
-
Hi!
We recently published a new tool, PATO, that is a modern and much faster version of Triplexator: https://doi.org/10.1093/bioinformatics/btad134. I see that your pipeline calls Triplexator under…
-
Hi,
I appreciate the new impulse into your project I already stumbled across several years ago, of wrapping bioinformatics task that can be solved by samtools, seqtk and bbtools, blast, .. into bas…
-
Hey Tom,
First, your pipeline is great, thank you! I've learned a lot from it as I do not come from a bioinformatics background.
I have a question about the step where the HGDP SNPs are extracte…
-
Hi
I can't seem to upload my otu_table.biom file on the Microbiome Explorer
it sent the Error
```
Warning: Error in if: missing value where TRUE/FALSE needed
45:
2: shiny::runApp
1: …
-
Some pipelines need to filter PSMs taking into account the Search Engine provisioning (which search engines have identified the corresponding spectrum), we see two cased here:
- [x] Filter Peptide…