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In a number of areas we have discussed, it would be be useful to have datasets which are calculated from other (raw) data, on demand, and cached for a reasonable time. Adding data on which the calcu…
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#### Pros
- Easier for people to learn about unfamiliar repositories at a glance
- Easier for people to build a mental picture of our system at a glance
- Easier for people to find what they're loo…
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Correct me if I am wrong but, for now, information such as which sdcflows method was applied is only visible in the html report.
It would be great to have it in the sidecar json to be parsable wi…
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Some quick brainstorming after taking into account what @lwjohnst86 @SaraMati discussed in https://github.com/UofTCoders/council/issues/286
1. Programming in Python:
- Basics (data structures, fu…
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I am getting an error running the galaxy2cwl.py
`````
File "/usr/lib/python3.5/json/__init__.py", line 312, in loads
s.__class__.__name__))
TypeError: the JSON object must be str, not 'byt…
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The BOSC page (https://en.wikipedia.org/wiki/Bioinformatics_Open_Source_Conference) was last edited in 2020 and is out of date (for example, it has a link to the old wiki rather than our newer website…
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The installation for gapseq requires root access to the machine which is often not the case for servers. It would be awesome if there was a conda package to facilitate a more accessible installation.
…
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Hello, I am trying to align metagenomic sequences, when I run initPipeline with the following command I get the expected output:
`initPipeline -q -1 Unmapped.out.mate1 -d projectDir -i 300:800`
Pr…
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consider this: https://github.com/maxogden/dat-oakland-land-use
look at the package.json `import` script. it essentially does these commands
```
wget -N http://data.openoakland.org/sites/default/fil…
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pip pyproject.toml and setuptools dont work nicely together [yet](https://stackoverflow.com/questions/71517365/pyproject-toml-wont-find-project-name-with-setuptools-python-m-build-format).
I tried …