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Hello,
First off, thank you so much for this js component
i've gone through the documentation and am sure i'm missing something
Essentially I'm looking for a "coverage" track similar to IGV a…
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It seem that hisat2-3n detect the strand of a sequence by the number of conversion, and assign a YZ tag for each read accordingly. This works for most of the situation, such as the example bellow (*a…
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Hello,
I am trying to use BS Seeker 2 to make an index of the Bovine Reference Genome for later alignment with WGBS data.
I ran the code:
python bs_seeker2-build.py -f ~/reference/file/locatio…
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Hey, @FelixKrueger I have been having a challenge understanding why R2 read from Illumina library has biases on methylation calls and how to correct them. I understand you can ignore a few bases 5' or…
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For Pacific Cod 40 samples...
Looking for WGBS and/or RRBS...
V interested in option for Revio Sequencing option https://pacbio.gs.washington.edu/
sr320 updated
1 month ago
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Hi,
No issue with the code but a question regarding the methylation correction.
I would like to re-implement your approach with the input being a Bismark methylation call file giving the follow…
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sr320 updated
1 month ago
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Can I use biscuit to do SNP calling with Nanopore sequencing reads from converted DNA? The reads will be aligned using Bismark with the `--mm2_nanopore` parameter.
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When I generate a figure including a basemod_freq track I get the following error message:
Traceback (most recent call last):
File "/home/u/miniconda3/lib/python3.10/site-packages/figeno/gui/gui…
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In the validation of anvil5, populated dataset descriptions are not being displayed. [This document](https://docs.google.com/document/d/17JtCSY6BTbU_dltA0mF06XMdFcpN_1oG5D9sjoQuqjQ/edit) contains two…